RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 LAMP3Q9UQV4 416 aa7.72□□□□□ -1.17
CUX1-206ENST00000437600 PIGBOS1A0A0B4J2F0 54 aa7.72□□□□□ -1.17
CUX1-206ENST00000437600 J3QR06 171 aa7.72□□□□□ -1.17
CUX1-206ENST00000437600 PAX1P15863 534 aa7.72□□□□□ -1.17
CUX1-206ENST00000437600 CHRNB4P30926 498 aa7.72□□□□□ -1.17
CUX1-206ENST00000437600 GATA4P43694 442 aa7.72□□□□□ -1.17
CUX1-206ENST00000437600 THBS3P49746 956 aa7.72□□□□□ -1.17
CUX1-206ENST00000437600 ATP6V1FQ16864 119 aa7.72□□□□□ -1.17
CUX1-206ENST00000437600 ZNF843Q8N446 348 aa7.72□□□□□ -1.17
CUX1-206ENST00000437600 WDR83OSQ9Y284 106 aa7.72□□□□□ -1.17
CUX1-206ENST00000437600 IGHV3-21A0A0B4J1V1 117 aa7.71□□□□□ -1.17
CUX1-206ENST00000437600 REG1AP05451 166 aa7.71□□□□□ -1.17
CUX1-206ENST00000437600 GNB1P62873 340 aa7.71□□□□□ -1.17
CUX1-206ENST00000437600 C3orf36Q3SXR2 165 aa7.71□□□□□ -1.17
CUX1-206ENST00000437600 TMEM200BQ69YZ2 307 aa7.71□□□□□ -1.17
CUX1-206ENST00000437600 NOL4LQ96MY1 436 aaPredicted RBP7.71□□□□□ -1.17
CUX1-206ENST00000437600 IDI2-AS1Q9NZ38 188 aa7.71□□□□□ -1.17
CUX1-206ENST00000437600 OR51B2Q9Y5P1 312 aa7.71□□□□□ -1.17
CUX1-206ENST00000437600 ZANQ9Y493 2812 aa7.71□□□□□ -1.18
CUX1-206ENST00000437600 IGKV1OR2-108A0A075B7D4 117 aa7.71□□□□□ -1.18
CUX1-206ENST00000437600 A0A087WWC5 75 aa7.71□□□□□ -1.18
CUX1-206ENST00000437600 IFNA1P01562 189 aa7.71□□□□□ -1.18
CUX1-206ENST00000437600 CD3EP07766 207 aa7.71□□□□□ -1.18
CUX1-206ENST00000437600 OR10J4P0C629 311 aa7.71□□□□□ -1.18
CUX1-206ENST00000437600 TNFRSF1AP19438 455 aa7.71□□□□□ -1.18
CUX1-206ENST00000437600 JOSD1Q15040 202 aaPredicted RBP7.71□□□□□ -1.18
CUX1-206ENST00000437600 ACOT6Q3I5F7 207 aaPredicted RBP7.71□□□□□ -1.18
CUX1-206ENST00000437600 C1orf87Q8N0U7 546 aa7.71□□□□□ -1.18
CUX1-206ENST00000437600 OR4P4Q8NGL7 312 aa7.71□□□□□ -1.18
CUX1-206ENST00000437600 OR4S2Q8NH73 311 aa7.71□□□□□ -1.18
CUX1-206ENST00000437600 TMEM208Q9BTX3 173 aa7.71□□□□□ -1.18
CUX1-206ENST00000437600 GGTLC1Q9BX51 225 aa7.71□□□□□ -1.18
CUX1-206ENST00000437600 MRPL20Q9BYC9 149 aaKnown RBP7.71□□□□□ -1.18
CUX1-206ENST00000437600 GAL3ST2Q9H3Q3 398 aa7.71□□□□□ -1.18
CUX1-206ENST00000437600 SLC35D1Q9NTN3 355 aa7.71□□□□□ -1.18
CUX1-206ENST00000437600 HECTD1Q9ULT8 2610 aa7.71□□□□□ -1.18
CUX1-206ENST00000437600 TRBV20OR9-2A0A075B6H5 130 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 TMEM238C9JI98 176 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 C17orf112F2Z3M2 114 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 C19orf84I3L1E1 186 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 HSPE1P61604 102 aaKnown RBP7.7□□□□□ -1.18
CUX1-206ENST00000437600 ODF1Q14990 250 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 DMRTA1Q5VZB9 504 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 CENPVQ7Z7K6 275 aaPredicted RBP7.7□□□□□ -1.18
CUX1-206ENST00000437600 OR2T6Q8NHC8 308 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 SNHG12Q9BXW3 62 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 ENSAO43768 121 aaKnown RBP7.7□□□□□ -1.18
CUX1-206ENST00000437600 KBTBD11O94819 623 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 NPY1RP25929 384 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 CR1LQ2VPA4 569 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 FAM78BQ5VT40 261 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 OR10A7Q8NGE5 316 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 OR9G1Q8NH87 305 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 NGBQ9NPG2 151 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 NAT8Q9UHE5 227 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 ITPR2Q14571 2701 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 A0A1B0GUS0 222 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 SCO2A0A1W2PP80 73 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 C15orf61A6NNL5 157 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 H7BYZ3 331 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 SPINK4O60575 86 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 AMBPP02760 352 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 SAA1P0DJI8 122 aaPredicted RBP7.7□□□□□ -1.18
CUX1-206ENST00000437600 S100A7P31151 101 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 GALR1P47211 349 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 SSBP2P81877 361 aaPredicted RBP7.7□□□□□ -1.18
CUX1-206ENST00000437600 TRAT1Q6PIZ9 186 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 STPG3Q8N7X2 389 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 ENY2Q9NPA8 101 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 CBLN4Q9NTU7 201 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 TMEM106BQ9NUM4 274 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 CTSZQ9UBR2 303 aa7.7□□□□□ -1.18
CUX1-206ENST00000437600 PPIAL4EA0A075B759 164 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 TEX50A0A1B0GTY4 177 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 PRSS46E5RG02 174 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 PPIAL4DF5H284 164 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 DVL1O14640 695 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 RBFOX2O43251 390 aaKnown RBP eCLIP7.69□□□□□ -1.186e-7■■■□□ 18.3
CUX1-206ENST00000437600 IL6RP08887 468 aaPredicted RBP7.69□□□□□ -1.18
CUX1-206ENST00000437600 FRMD6-AS1P0C7T7 363 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 PPIAL4FP0DN26 164 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 EFNB3Q15768 340 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 MIR17HGQ75NE6 70 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 MUC15Q8N387 334 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 ZNF439Q8NDP4 499 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 BEND2Q8NDZ0 799 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 ACY3Q96HD9 319 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 P2RX4Q99571 388 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 NPVFQ9HCQ7 196 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 RPUSD1Q9UJJ7 312 aaKnown RBP7.69□□□□□ -1.18
CUX1-206ENST00000437600 PITPNC1Q9UKF7 332 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 PPIAL4AQ9Y536 164 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 YTHDF2Q9Y5A9 579 aaKnown RBP7.69□□□□□ -1.18
CUX1-206ENST00000437600 TIMM9Q9Y5J7 89 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 CUBNO60494 3623 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 ANKRD17O75179 2603 aaKnown RBP7.69□□□□□ -1.18
CUX1-206ENST00000437600 TMEM178BH3BS89 294 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 CDKN1BP46527 198 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 GAGE1Q13065 139 aa7.69□□□□□ -1.18
CUX1-206ENST00000437600 VWC2Q2TAL6 325 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms