RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 MOB3BQ86TA1 216 aa8.71□□□□□ -1.01
CUX1-205ENST00000425244 FAM216AQ8WUB2 273 aa8.71□□□□□ -1.01
CUX1-205ENST00000425244 C1orf159Q96HA4 380 aa8.71□□□□□ -1.01
CUX1-205ENST00000425244 PYGO2Q9BRQ0 406 aa8.71□□□□□ -1.01
CUX1-205ENST00000425244 GAL3ST2Q9H3Q3 398 aa8.71□□□□□ -1.01
CUX1-205ENST00000425244 PLEKHA3Q9HB20 300 aa8.71□□□□□ -1.01
CUX1-205ENST00000425244 SLC35D1Q9NTN3 355 aa8.71□□□□□ -1.01
CUX1-205ENST00000425244 TMEM14BQ9NUH8 114 aa8.71□□□□□ -1.01
CUX1-205ENST00000425244 FOXA2Q9Y261 457 aaPredicted RBP8.71□□□□□ -1.01
CUX1-205ENST00000425244 LRRK2Q5S007 2527 aa8.71□□□□□ -1.02
CUX1-205ENST00000425244 F6UZH7 168 aa8.71□□□□□ -1.02
CUX1-205ENST00000425244 J3QR06 171 aa8.71□□□□□ -1.02
CUX1-205ENST00000425244 SIAH2O43255 324 aa8.71□□□□□ -1.02
CUX1-205ENST00000425244 FOXH1O75593 365 aa8.71□□□□□ -1.02
CUX1-205ENST00000425244 STAG3L2P0CL84 134 aa8.71□□□□□ -1.02
CUX1-205ENST00000425244 STAG3L3P0CL85 134 aa8.71□□□□□ -1.02
CUX1-205ENST00000425244 PRSS8Q16651 343 aa8.71□□□□□ -1.02
CUX1-205ENST00000425244 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.71□□□□□ -1.02
CUX1-205ENST00000425244 LSM4Q9Y4Z0 139 aaKnown RBP8.71□□□□□ -1.02
CUX1-205ENST00000425244 YTHDF2Q9Y5A9 579 aaKnown RBP8.71□□□□□ -1.02
CUX1-205ENST00000425244 SHISA9B4DS77 424 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 E7EQL1 145 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 CT45A6P0DMU7 189 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 CT45A5P0DMU8 189 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 CT45A7P0DMV0 189 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 REG1BP48304 166 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 EFNB3Q15768 340 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 RTL8BQ17RB0 113 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 ZNF788Q6ZQV5 615 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 TMEM183AQ8IXX5 376 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 ZNF439Q8NDP4 499 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 OR4P4Q8NGL7 312 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 OR1P1Q8NH06 330 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 ADTRPQ96IZ2 230 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 DYSFO75923 2080 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 TRBV20OR9-2A0A075B6H5 130 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 ZNF320A2RRD8 509 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 SRRM4A7MD48 611 aaKnown RBP8.7□□□□□ -1.02
CUX1-205ENST00000425244 GCHFRP30047 84 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 SRP14P37108 136 aaKnown RBP8.7□□□□□ -1.02
CUX1-205ENST00000425244 RHOBP62745 196 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 FBXL19-AS1Q494R0 122 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 NUP37Q8NFH4 326 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 ITLN2Q8WWU7 325 aaPredicted RBP8.7□□□□□ -1.02
CUX1-205ENST00000425244 PRNDQ9UKY0 176 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 DSCAML1Q8TD84 2053 aa8.7□□□□□ -1.02
CUX1-205ENST00000425244 CELSR2Q9HCU4 2923 aa8.69□□□□□ -1.02
CUX1-205ENST00000425244 MDFIC2A0A1B0GVS7 189 aa8.69□□□□□ -1.02
CUX1-205ENST00000425244 hADV38S2A0JD32 116 aa8.69□□□□□ -1.02
CUX1-205ENST00000425244 NKX6-3A6NJ46 265 aa8.69□□□□□ -1.02
CUX1-205ENST00000425244 GGCTO75223 188 aaKnown RBP8.69□□□□□ -1.02
CUX1-205ENST00000425244 CCL3L1P16619 93 aa8.69□□□□□ -1.02
CUX1-205ENST00000425244 GATA2P23769 480 aaPredicted RBP8.69□□□□□ -1.02
CUX1-205ENST00000425244 IL3RAP26951 378 aa8.69□□□□□ -1.02
CUX1-205ENST00000425244 DYNLRB1Q9NP97 96 aa8.69□□□□□ -1.02
CUX1-205ENST00000425244 SLC25A10Q9UBX3 287 aaPredicted RBP8.69□□□□□ -1.02
CUX1-205ENST00000425244 RPUSD1Q9UJJ7 312 aaKnown RBP8.69□□□□□ -1.02
CUX1-205ENST00000425244 RAI1Q7Z5J4 1906 aaPredicted RBP8.69□□□□□ -1.02
CUX1-205ENST00000425244 M0R143 59 aa8.69□□□□□ -1.02
CUX1-205ENST00000425244 CDKN1BP46527 198 aa8.69□□□□□ -1.02
CUX1-205ENST00000425244 RPL31P62899 125 aaKnown RBP8.69□□□□□ -1.02
CUX1-205ENST00000425244 MIR17HGQ75NE6 70 aa8.69□□□□□ -1.02
CUX1-205ENST00000425244 SGMS2Q8NHU3 365 aa8.69□□□□□ -1.02
CUX1-205ENST00000425244 H1FXQ92522 213 aaKnown RBP8.69□□□□□ -1.02
CUX1-205ENST00000425244 SFRP2Q96HF1 295 aa8.69□□□□□ -1.02
CUX1-205ENST00000425244 MRPL20Q9BYC9 149 aaKnown RBP8.69□□□□□ -1.02
CUX1-205ENST00000425244 C19orf84I3L1E1 186 aa8.68□□□□□ -1.02
CUX1-205ENST00000425244 M0QZK8 103 aa8.68□□□□□ -1.02
CUX1-205ENST00000425244 AMBPP02760 352 aa8.68□□□□□ -1.02
CUX1-205ENST00000425244 TMEM249Q2WGJ8 235 aa8.68□□□□□ -1.02
CUX1-205ENST00000425244 ACTL10Q5JWF8 245 aa8.68□□□□□ -1.02
CUX1-205ENST00000425244 SLC25A48Q6ZT89 311 aaKnown RBP8.68□□□□□ -1.02
CUX1-205ENST00000425244 ZNF664Q8N3J9 261 aa8.68□□□□□ -1.02
CUX1-205ENST00000425244 RNASE8Q8TDE3 154 aaKnown RBP8.68□□□□□ -1.02
CUX1-205ENST00000425244 CCL17Q92583 94 aa8.68□□□□□ -1.02
CUX1-205ENST00000425244 TANC2Q9HCD6 1990 aa8.68□□□□□ -1.02
CUX1-205ENST00000425244 UPK2O00526 184 aa8.68□□□□□ -1.02
CUX1-205ENST00000425244 SAA1P0DJI8 122 aaPredicted RBP8.68□□□□□ -1.02
CUX1-205ENST00000425244 MLANAQ16655 118 aa8.68□□□□□ -1.02
CUX1-205ENST00000425244 OR10W1Q8NGF6 305 aa8.68□□□□□ -1.02
CUX1-205ENST00000425244 OCC1Q8TAD7 63 aa8.68□□□□□ -1.02
CUX1-205ENST00000425244 VSTM5A8MXK1 200 aa8.67□□□□□ -1.02
CUX1-205ENST00000425244 TNFRSF1AP19438 455 aa8.67□□□□□ -1.02
CUX1-205ENST00000425244 PRCDQ00LT1 54 aa8.67□□□□□ -1.02
CUX1-205ENST00000425244 PSG5Q15238 335 aa8.67□□□□□ -1.02
CUX1-205ENST00000425244 ZNF843Q8N446 348 aa8.67□□□□□ -1.02
CUX1-205ENST00000425244 HARBI1Q96MB7 349 aa8.67□□□□□ -1.02
CUX1-205ENST00000425244 TRAPPC1Q9Y5R8 145 aa8.67□□□□□ -1.02
CUX1-205ENST00000425244 CSMD1Q96PZ7 3565 aa8.67□□□□□ -1.02
CUX1-205ENST00000425244 TEX50A0A1B0GTY4 177 aa8.67□□□□□ -1.02
CUX1-205ENST00000425244 C17orf100A8MU93 164 aa8.67□□□□□ -1.02
CUX1-205ENST00000425244 MT-CO2P00403 227 aa8.67□□□□□ -1.02
CUX1-205ENST00000425244 RPL29P47914 159 aaKnown RBP8.67□□□□□ -1.02
CUX1-205ENST00000425244 GSX1Q9H4S2 264 aaPredicted RBP8.67□□□□□ -1.02
CUX1-205ENST00000425244 SAP30LQ9HAJ7 183 aa8.67□□□□□ -1.02
CUX1-205ENST00000425244 OR7C2O60412 319 aa8.67□□□□□ -1.02
CUX1-205ENST00000425244 OR10J1P30954 320 aa8.67□□□□□ -1.02
CUX1-205ENST00000425244 SSX8Q7RTT4 187 aa8.67□□□□□ -1.02
CUX1-205ENST00000425244 MUC15Q8N387 334 aa8.67□□□□□ -1.02
CUX1-205ENST00000425244 LINC00312Q9Y6C7 94 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms