RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 PARD6GQ9BYG4 376 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-204ENST00000423058 SRXN1Q9BYN0 137 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 MED12Q93074 2177 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 PRSS23O95084 383 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 RCC1P18754 421 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-204ENST00000423058 GLIPR1P48060 266 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 TMEM91Q6ZNR0 172 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 AQP3Q92482 292 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 V9GYH0 126 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 GCHFRP30047 84 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 BMPERQ8N8U9 685 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 SEPSECSQ9HD40 501 aaKnown RBP5.8□□□□□ -1.48
SCN1A-204ENST00000423058 IGKV3D-20A0A0C4DH25 116 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 F2Z2F3 143 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 IL11P20809 199 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 PVRIGQ6DKI7 326 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 RNF166Q96A37 237 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-204ENST00000423058 IGHV3-35A0A0C4DH35 117 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 ORMDL2Q53FV1 153 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 DRAM1Q8N682 238 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 TRAV9-2A0A087WT02 112 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 MSGN1A6NI15 193 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 C15orf61A6NNL5 157 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 E9PLN8 166 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 VENTXO95231 258 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 IGKV1D-16P01601 117 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 C18orf15Q96N68 181 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 VKORC1Q9BQB6 163 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 CYSLTR1Q9Y271 337 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 COL11A2P13942 1736 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-204ENST00000423058 TRAV9-1A0A075B6T8 112 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 A0A1B0GV72 72 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 OVOL1O14753 267 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 MSRB3Q8IXL7 192 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 IFI27L2Q9H2X8 130 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 FOXJ2Q9P0K8 574 aa5.8□□□□□ -1.48
SCN1A-204ENST00000423058 SIGLEC15Q6ZMC9 328 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 LHFPL6Q9Y693 200 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 UPK2O00526 184 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 TRGC2P03986 189 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 LGALS1P09382 135 aaKnown RBP5.79□□□□□ -1.48
SCN1A-204ENST00000423058 PAX8Q06710 450 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 OR52E5Q8NH55 327 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 RPP21Q9H633 154 aaKnown RBP5.79□□□□□ -1.48
SCN1A-204ENST00000423058 OTORQ9NRC9 128 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 MRPS18AQ9NVS2 196 aaKnown RBP5.79□□□□□ -1.48
SCN1A-204ENST00000423058 TMEM8BA6NDV4 472 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 CD28P10747 220 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 LINC00158P58513 81 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 RUNX1Q01196 453 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 LIMS2Q7Z4I7 341 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 OR4D11Q8NGI4 311 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 Q96M66 194 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 IGHV2OR16-5A0A0B4J2B6 119 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 TOMM40O96008 361 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 CSRP1P21291 193 aaKnown RBP5.79□□□□□ -1.48
SCN1A-204ENST00000423058 SEC11AP67812 179 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 FAM27E3Q08E93 113 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 Q9H3A6 140 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 IGHV3OR16-13A0A075B7E8 117 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 IGHV3-74A0A0B4J1X5 117 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 CECR9P0C854 216 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 SRD5A1P18405 259 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 CXCL3P19876 107 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 DTX4Q9Y2E6 619 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 ZNF585BQ52M93 769 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 POC1AQ8NBT0 407 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 OR11H7Q8NGC8 314 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 ZMAT4Q9H898 229 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 NLRC5Q86WI3 1866 aa5.79□□□□□ -1.48
SCN1A-204ENST00000423058 DPRXA6NFQ7 191 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 APOHP02749 345 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-204ENST00000423058 GZMBP10144 247 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 TNFRSF14Q92956 283 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 TRBV7-1A0A0A6YYK4 115 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 IGHV3-48P01763 117 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 ZNF79Q15937 498 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 ZAR1Q86SH2 424 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 DNAJC30Q96LL9 226 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 GDF15Q99988 308 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 PPBPP02775 128 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 TEX38Q6PEX7 206 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 PILRAQ9UKJ1 303 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 TBL2Q9Y4P3 447 aaKnown RBP5.78□□□□□ -1.48
SCN1A-204ENST00000423058 CBLN2Q8IUK8 224 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 ZNF257Q9Y2Q1 563 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 SPTAN1Q13813 2472 aaKnown RBP5.78□□□□□ -1.48
SCN1A-204ENST00000423058 KLF4O43474 513 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 RPL39P5Q59GN2 51 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 RBM38Q9H0Z9 239 aaKnown RBP5.78□□□□□ -1.48
SCN1A-204ENST00000423058 KLHDC2Q9Y2U9 406 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 TMEM131Q92545 1883 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 TRAV12-3A0A0B4J271 114 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 TNFSF13O75888 250 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 IGHV3-11P01762 117 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 OTX1P32242 354 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-204ENST00000423058 SS18Q15532 418 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 ATP1A1-AS1Q5TC04 95 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 BHLHA9Q7RTU4 235 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 C9orf62Q8N4C0 152 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms