RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 GINS3Q9BRX5 216 aa8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 NXF2Q9GZY0 626 aaKnown RBP8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 ALMS1Q8TCU4 4167 aa8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 FAM25AB3EWG3 89 aa8.55□□□□□ -1.04
SQSTM1-203ENST00000422245 FAM25CB3EWG5 89 aa8.55□□□□□ -1.04
SQSTM1-203ENST00000422245 FAM25GB3EWG6 89 aa8.55□□□□□ -1.04
SQSTM1-203ENST00000422245 INS-IGF2F8WCM5 200 aa8.55□□□□□ -1.04
SQSTM1-203ENST00000422245 CD5P06127 495 aa8.55□□□□□ -1.04
SQSTM1-203ENST00000422245 NPBWR1P48145 328 aa8.55□□□□□ -1.04
SQSTM1-203ENST00000422245 AKR1C2P52895 323 aa8.55□□□□□ -1.04
SQSTM1-203ENST00000422245 CMC4P56277 68 aaPredicted RBP8.55□□□□□ -1.04
SQSTM1-203ENST00000422245 PMS2P11Q13670 270 aa8.55□□□□□ -1.04
SQSTM1-203ENST00000422245 LHFPL1Q86WI0 220 aa8.55□□□□□ -1.04
SQSTM1-203ENST00000422245 SLC35G3Q8N808 338 aa8.55□□□□□ -1.04
SQSTM1-203ENST00000422245 LINC00476Q8WZB0 136 aa8.55□□□□□ -1.04
SQSTM1-203ENST00000422245 PINX1Q96BK5 328 aaKnown RBP8.55□□□□□ -1.04
SQSTM1-203ENST00000422245 RNF183Q96D59 192 aa8.55□□□□□ -1.04
SQSTM1-203ENST00000422245 TRAV14DV4A0A0A6YYC5 116 aa8.54□□□□□ -1.04
SQSTM1-203ENST00000422245 CORTO00230 105 aa8.54□□□□□ -1.04
SQSTM1-203ENST00000422245 GABARAPO95166 117 aa8.54□□□□□ -1.04
SQSTM1-203ENST00000422245 IGKV1-5P01602 117 aa8.54□□□□□ -1.04
SQSTM1-203ENST00000422245 P0C879 139 aa8.54□□□□□ -1.04
SQSTM1-203ENST00000422245 RPL35AP18077 110 aaKnown RBP8.54□□□□□ -1.04
SQSTM1-203ENST00000422245 SNCAP37840 140 aa8.54□□□□□ -1.04
SQSTM1-203ENST00000422245 PIGPP57054 158 aa8.54□□□□□ -1.04
SQSTM1-203ENST00000422245 RNASE12Q5GAN4 147 aaKnown RBP8.54□□□□□ -1.04
SQSTM1-203ENST00000422245 DUSP18Q8NEJ0 188 aa8.54□□□□□ -1.04
SQSTM1-203ENST00000422245 C15orf40Q8WUR7 153 aa8.54□□□□□ -1.04
SQSTM1-203ENST00000422245 PDCD10Q9BUL8 212 aa8.54□□□□□ -1.04
SQSTM1-203ENST00000422245 MAP6D1Q9H9H5 199 aa8.54□□□□□ -1.04
SQSTM1-203ENST00000422245 C3orf85A0A1B0GTC6 90 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 SCGB2A1O75556 95 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 B3GALNT1O75752 331 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 IGHV3-48P01763 117 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 CD3DP04234 171 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 PI3P19957 117 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 TFPI2P48307 235 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 HOXA1P49639 335 aaPredicted RBP8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 PPP5CP53041 499 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 PAFAH1B2P68402 229 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 TRIM16LQ309B1 348 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 SPINK9Q5DT21 86 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 ZNF600Q6ZNG1 722 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 APRG1Q8IVJ8 170 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 CCDC71LQ8N9Z2 235 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 OR52I2Q8NH67 350 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 TP53RKQ96S44 253 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 COPZ2Q9P299 210 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 EXTL2Q9UBQ6 330 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 KLK11Q9UBX7 282 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 MTFP1Q9UDX5 166 aa8.53□□□□□ -1.04
SQSTM1-203ENST00000422245 IGHV3-49A0A0A0MS15 119 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 A0A0B4J293 547 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 MPTX1A8MV57 137 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 ST8SIA3O43173 380 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 IFNA17P01571 189 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 ZNF182P17025 639 aaPredicted RBP8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 SUB1P53999 127 aaKnown RBP eCLIP8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 TAS2R19P59542 299 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 EWSR1Q01844 656 aaKnown RBP eCLIP8.52□□□□□ -1.053e-8■■■□□ 18.8
SQSTM1-203ENST00000422245 CTF1Q16619 201 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 IZUMO4Q1ZYL8 232 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 FAM90A2PQ658T7 463 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 PVRIGQ6DKI7 326 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 CEMP1Q6PRD7 247 aaPredicted RBP8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 TOMM20LQ6UXN7 152 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 TCF24Q7RTU0 167 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 ZFAND1Q8TCF1 268 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 GATAD1Q8WUU5 269 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 RRNAD1Q96FB5 475 aaKnown RBP8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 CSTL1Q9H114 145 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 TMEM231Q9H6L2 316 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 VSIRQ9H7M9 311 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 ENY2Q9NPA8 101 aa8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 KLK5Q9Y337 293 aaPredicted RBP8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 PUS1Q9Y606 427 aaKnown RBP eCLIP8.52□□□□□ -1.05
SQSTM1-203ENST00000422245 IGKV3-7A0A075B6H7 116 aa8.51□□□□□ -1.05
SQSTM1-203ENST00000422245 IGHV3OR16-13A0A075B7E8 117 aa8.51□□□□□ -1.05
SQSTM1-203ENST00000422245 IGHV3-74A0A0B4J1X5 117 aa8.51□□□□□ -1.05
SQSTM1-203ENST00000422245 TRAV2A0A0B4J234 112 aa8.51□□□□□ -1.05
SQSTM1-203ENST00000422245 DFFBO76075 338 aa8.51□□□□□ -1.05
SQSTM1-203ENST00000422245 CD74P04233 296 aa8.51□□□□□ -1.05
SQSTM1-203ENST00000422245 UCP1P25874 307 aa8.51□□□□□ -1.05
SQSTM1-203ENST00000422245 MRPS10P82664 201 aaKnown RBP8.51□□□□□ -1.05
SQSTM1-203ENST00000422245 TMEM229BQ8NBD8 167 aa8.51□□□□□ -1.05
SQSTM1-203ENST00000422245 OR13C8Q8NGS7 320 aa8.51□□□□□ -1.05
SQSTM1-203ENST00000422245 TERB2Q8NHR7 220 aa8.51□□□□□ -1.05
SQSTM1-203ENST00000422245 RNASE11Q8TAA1 199 aaKnown RBP8.51□□□□□ -1.05
SQSTM1-203ENST00000422245 ST8SIA2Q92186 375 aa8.51□□□□□ -1.05
SQSTM1-203ENST00000422245 NAA50Q9GZZ1 169 aaKnown RBP8.51□□□□□ -1.05
SQSTM1-203ENST00000422245 ZFAND3Q9H8U3 227 aa8.51□□□□□ -1.05
SQSTM1-203ENST00000422245 RAB3DO95716 219 aa8.5□□□□□ -1.05
SQSTM1-203ENST00000422245 LY6G6CO95867 125 aa8.5□□□□□ -1.05
SQSTM1-203ENST00000422245 SMIM18P0DKX4 95 aa8.5□□□□□ -1.05
SQSTM1-203ENST00000422245 RNASE2P10153 161 aaKnown RBP8.5□□□□□ -1.05
SQSTM1-203ENST00000422245 OPRK1P41145 380 aa8.5□□□□□ -1.05
SQSTM1-203ENST00000422245 SSBP1Q04837 148 aaKnown RBP8.5□□□□□ -1.05
SQSTM1-203ENST00000422245 MEF2DQ14814 521 aa8.5□□□□□ -1.05
SQSTM1-203ENST00000422245 ZNF124Q15973 351 aa8.5□□□□□ -1.05
SQSTM1-203ENST00000422245 SCGB2B2Q4G0G5 96 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms