RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 C2CD4CQ8TF44 421 aa5.9□□□□□ -1.46
VIM-202ENST00000421459 LSM10Q969L4 123 aaKnown RBP5.9□□□□□ -1.46
VIM-202ENST00000421459 OR10C1Q96KK4 312 aa5.9□□□□□ -1.46
VIM-202ENST00000421459 ZNF2Q9BSG1 426 aaPredicted RBP5.9□□□□□ -1.46
VIM-202ENST00000421459 FXYD6Q9H0Q3 95 aa5.9□□□□□ -1.46
VIM-202ENST00000421459 MS4A6AQ9H2W1 248 aa5.9□□□□□ -1.46
VIM-202ENST00000421459 EHFQ9NZC4 300 aa5.9□□□□□ -1.46
VIM-202ENST00000421459 COMMD9Q9P000 198 aa5.9□□□□□ -1.46
VIM-202ENST00000421459 SSR3Q9UNL2 185 aa5.9□□□□□ -1.46
VIM-202ENST00000421459 TRAV14DV4A0A0A6YYC5 116 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 LOC100506127A0A0U1RQW1 187 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 CCDC160A6NGH7 325 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 KNCNA6PVL3 124 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 CYB5BO43169 146 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 NOL3O60936 208 aaKnown RBP5.89□□□□□ -1.47
VIM-202ENST00000421459 MT-CO2P00403 227 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 IGKV1-39P01597 117 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 IGKV1D-39P04432 117 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 HERV-K104P61576 105 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 TMEM187Q14656 261 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 PHLDA2Q53GA4 152 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 DHRS11Q6UWP2 260 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 TOMM20LQ6UXN7 152 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 ZNF767PQ75MW2 155 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 Q8NAQ8 132 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 PINX1Q96BK5 328 aaKnown RBP5.89□□□□□ -1.47
VIM-202ENST00000421459 SCRT1Q9BWW7 348 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 C6orf62Q9GZU0 229 aaPredicted RBP5.89□□□□□ -1.47
VIM-202ENST00000421459 NXF2Q9GZY0 626 aaKnown RBP5.89□□□□□ -1.47
VIM-202ENST00000421459 C11orf68Q9H3H3 251 aaKnown RBP5.89□□□□□ -1.47
VIM-202ENST00000421459 CLEC5AQ9NY25 188 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 PTTG2Q9NZH5 202 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 HSPG2P98160 4391 aa5.89□□□□□ -1.47
VIM-202ENST00000421459 ELOA3CA0A087WX78 387 aaPredicted RBP5.88□□□□□ -1.47
VIM-202ENST00000421459 IGHV4-28A0A0C4DH34 117 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 A0A1B0GU03 582 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 C15orf61A6NNL5 157 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 DNASE2O00115 360 aaPredicted RBP5.88□□□□□ -1.47
VIM-202ENST00000421459 ST8SIA3O43173 380 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 SNAPC5O75971 98 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 HLA-DMBP28068 263 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 MFAP4P55083 255 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 VBP1P61758 197 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 NCS1P62166 190 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 RPL11P62913 178 aaKnown RBP5.88□□□□□ -1.47
VIM-202ENST00000421459 RELQ04864 619 aaPredicted RBP5.88□□□□□ -1.47
VIM-202ENST00000421459 SPCS2Q15005 226 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 MLANAQ16655 118 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 THOC7Q6I9Y2 204 aaKnown RBP5.88□□□□□ -1.47
VIM-202ENST00000421459 Q6ZTC4 211 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 HSD17B13Q7Z5P4 300 aaPredicted RBP5.88□□□□□ -1.47
VIM-202ENST00000421459 LYSMD2Q8IV50 215 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 OR1P1Q8NH06 330 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 DYNC2LI1Q8TCX1 351 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 MOB3AQ96BX8 217 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 TMEM56Q96MV1 263 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 MFFQ9GZY8 342 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 IFT46Q9NQC8 304 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 DIABLOQ9NR28 239 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 TMEM14BQ9NUH8 114 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 PRNDQ9UKY0 176 aa5.88□□□□□ -1.47
VIM-202ENST00000421459 GNG7O60262 68 aa5.87□□□□□ -1.47
VIM-202ENST00000421459 FGF2P09038 288 aa5.87□□□□□ -1.47
VIM-202ENST00000421459 C4BPBP20851 252 aa5.87□□□□□ -1.47
VIM-202ENST00000421459 HLA-DMAP28067 261 aa5.87□□□□□ -1.47
VIM-202ENST00000421459 CBX5P45973 191 aa5.87□□□□□ -1.47
VIM-202ENST00000421459 PPP5CP53041 499 aa5.87□□□□□ -1.47
VIM-202ENST00000421459 SEC22AQ96IW7 307 aa5.87□□□□□ -1.47
VIM-202ENST00000421459 CMTM3Q96MX0 182 aa5.87□□□□□ -1.47
VIM-202ENST00000421459 ATP6V0BQ99437 205 aa5.87□□□□□ -1.47
VIM-202ENST00000421459 VSIRQ9H7M9 311 aa5.87□□□□□ -1.47
VIM-202ENST00000421459 ZFAND3Q9H8U3 227 aa5.87□□□□□ -1.47
VIM-202ENST00000421459 CCDC59Q9P031 241 aaKnown RBP5.87□□□□□ -1.47
VIM-202ENST00000421459 MRPL36Q9P0J6 103 aaKnown RBP5.87□□□□□ -1.47
VIM-202ENST00000421459 RABAC1Q9UI14 185 aa5.87□□□□□ -1.47
VIM-202ENST00000421459 ANAPC10Q9UM13 185 aa5.87□□□□□ -1.47
VIM-202ENST00000421459 CELA1Q9UNI1 258 aa5.87□□□□□ -1.47
VIM-202ENST00000421459 PUS1Q9Y606 427 aaKnown RBP eCLIP5.87□□□□□ -1.47
VIM-202ENST00000421459 X6R8D5 127 aa5.87□□□□□ -1.47
VIM-202ENST00000421459 LRP1BQ9NZR2 4599 aa5.87□□□□□ -1.47
VIM-202ENST00000421459 IGHV4-4A0A075B6R2 117 aa5.86□□□□□ -1.47
VIM-202ENST00000421459 A0A0A6YYH2 397 aa5.86□□□□□ -1.47
VIM-202ENST00000421459 A0A1B0GVY2 172 aa5.86□□□□□ -1.47
VIM-202ENST00000421459 A6NJ64 397 aa5.86□□□□□ -1.47
VIM-202ENST00000421459 M0R2N4 97 aa5.86□□□□□ -1.47
VIM-202ENST00000421459 GPR31O00270 319 aa5.86□□□□□ -1.47
VIM-202ENST00000421459 ZNF182P17025 639 aaPredicted RBP5.86□□□□□ -1.47
VIM-202ENST00000421459 HRH1P35367 487 aa5.86□□□□□ -1.47
VIM-202ENST00000421459 CMC4P56277 68 aaPredicted RBP5.86□□□□□ -1.47
VIM-202ENST00000421459 TAS2R20P59543 309 aa5.86□□□□□ -1.47
VIM-202ENST00000421459 LSM3P62310 102 aaKnown RBP5.86□□□□□ -1.47
VIM-202ENST00000421459 PAFAH1B2P68402 229 aa5.86□□□□□ -1.47
VIM-202ENST00000421459 LINC00299Q6ZSB3 139 aa5.86□□□□□ -1.47
VIM-202ENST00000421459 TRPT1Q86TN4 253 aaKnown RBP5.86□□□□□ -1.47
VIM-202ENST00000421459 TBC1D26Q86UD7 250 aa5.86□□□□□ -1.47
VIM-202ENST00000421459 STHQ8IWL8 128 aa5.86□□□□□ -1.47
VIM-202ENST00000421459 OR5H2Q8NGV7 314 aa5.86□□□□□ -1.47
VIM-202ENST00000421459 OR4A16Q8NH70 328 aa5.86□□□□□ -1.47
VIM-202ENST00000421459 MRGPRFQ96AM1 343 aa5.86□□□□□ -1.47
VIM-202ENST00000421459 TXN2Q99757 166 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms