RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 LEMD1Q68G75 181 aa8.5□□□□□ -1.05
USP4-204ENST00000416417 TCF24Q7RTU0 167 aa8.5□□□□□ -1.05
USP4-204ENST00000416417 FAM24BQ8N5W8 94 aa8.5□□□□□ -1.05
USP4-204ENST00000416417 PHLDA1Q8WV24 401 aaPredicted RBP8.5□□□□□ -1.05
USP4-204ENST00000416417 OR10C1Q96KK4 312 aa8.5□□□□□ -1.05
USP4-204ENST00000416417 CSTL1Q9H114 145 aa8.5□□□□□ -1.05
USP4-204ENST00000416417 IGKV1-5P01602 117 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 PGAM2P15259 253 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 RCVRNP35243 200 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 HSPE1P61604 102 aaKnown RBP8.49□□□□□ -1.05
USP4-204ENST00000416417 MLANAQ16655 118 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 LPCAT3Q6P1A2 487 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 TOMM20LQ6UXN7 152 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 CADM3Q8N126 398 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 TP53RKQ96S44 253 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 ATP6V0BQ99437 205 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 FUNDC2Q9BWH2 189 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 MRPL36Q9P0J6 103 aaKnown RBP8.49□□□□□ -1.05
USP4-204ENST00000416417 FBXL17Q9UF56 701 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 A0A087WXM4 84 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 A0A1B0GU03 582 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 SMIM31A0A1B0GVY4 71 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 MPTX1A8MV57 137 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 ST8SIA3O43173 380 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 DFFBO76075 338 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 APOA1P02647 267 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 S100GP29377 79 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 PPP5CP53041 499 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 SP6Q3SY56 376 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 OR11H2Q8NH07 326 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 RARRES2Q99969 163 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 NAA50Q9GZZ1 169 aaKnown RBP8.49□□□□□ -1.05
USP4-204ENST00000416417 KLK11Q9UBX7 282 aa8.49□□□□□ -1.05
USP4-204ENST00000416417 KLK5Q9Y337 293 aaPredicted RBP8.49□□□□□ -1.05
USP4-204ENST00000416417 PUS1Q9Y606 427 aaKnown RBP eCLIP8.49□□□□□ -1.05
USP4-204ENST00000416417 A0A0B4J293 547 aa8.48□□□□□ -1.05
USP4-204ENST00000416417 FAM25AB3EWG3 89 aa8.48□□□□□ -1.05
USP4-204ENST00000416417 FAM25CB3EWG5 89 aa8.48□□□□□ -1.05
USP4-204ENST00000416417 FAM25GB3EWG6 89 aa8.48□□□□□ -1.05
USP4-204ENST00000416417 CA1P00915 261 aaPredicted RBP8.48□□□□□ -1.05
USP4-204ENST00000416417 ETV6P41212 452 aa8.48□□□□□ -1.05
USP4-204ENST00000416417 UCP3P55916 312 aa8.48□□□□□ -1.05
USP4-204ENST00000416417 DEFB131AP59861 70 aa8.48□□□□□ -1.05
USP4-204ENST00000416417 RPL11P62913 178 aaKnown RBP8.48□□□□□ -1.05
USP4-204ENST00000416417 ERHP84090 104 aaKnown RBP8.48□□□□□ -1.05
USP4-204ENST00000416417 ZNF114Q8NC26 417 aa8.48□□□□□ -1.05
USP4-204ENST00000416417 OR4D10Q8NGI6 311 aa8.48□□□□□ -1.05
USP4-204ENST00000416417 CMTM3Q96MX0 182 aa8.48□□□□□ -1.05
USP4-204ENST00000416417 TXN2Q99757 166 aa8.48□□□□□ -1.05
USP4-204ENST00000416417 C6orf62Q9GZU0 229 aaPredicted RBP8.48□□□□□ -1.05
USP4-204ENST00000416417 MS4A6AQ9H2W1 248 aa8.48□□□□□ -1.05
USP4-204ENST00000416417 ZFAND3Q9H8U3 227 aa8.48□□□□□ -1.05
USP4-204ENST00000416417 SCPEP1Q9HB40 452 aa8.48□□□□□ -1.05
USP4-204ENST00000416417 VCX3AQ9NNX9 186 aa8.48□□□□□ -1.05
USP4-204ENST00000416417 FRAS1Q86XX4 4008 aa8.47□□□□□ -1.05
USP4-204ENST00000416417 A0A0G2JRQ6 117 aa8.47□□□□□ -1.05
USP4-204ENST00000416417 DNASE2O00115 360 aaPredicted RBP8.47□□□□□ -1.05
USP4-204ENST00000416417 IFNA17P01571 189 aa8.47□□□□□ -1.05
USP4-204ENST00000416417 CD3DP04234 171 aa8.47□□□□□ -1.05
USP4-204ENST00000416417 AKR1C2P52895 323 aa8.47□□□□□ -1.05
USP4-204ENST00000416417 PIGPP57054 158 aa8.47□□□□□ -1.05
USP4-204ENST00000416417 SLC35G3Q8N808 338 aa8.47□□□□□ -1.05
USP4-204ENST00000416417 OR52I2Q8NH67 350 aa8.47□□□□□ -1.05
USP4-204ENST00000416417 FAM212BQ9NTI7 297 aaPredicted RBP8.47□□□□□ -1.05
USP4-204ENST00000416417 RABAC1Q9UI14 185 aa8.47□□□□□ -1.05
USP4-204ENST00000416417 TNFAIP8O95379 198 aa8.46□□□□□ -1.05
USP4-204ENST00000416417 TMEM50AO95807 157 aa8.46□□□□□ -1.05
USP4-204ENST00000416417 P0C879 139 aa8.46□□□□□ -1.05
USP4-204ENST00000416417 RNASE2P10153 161 aaKnown RBP8.46□□□□□ -1.05
USP4-204ENST00000416417 SNCAP37840 140 aa8.46□□□□□ -1.05
USP4-204ENST00000416417 RNASE10Q5GAN6 216 aaKnown RBP8.46□□□□□ -1.05
USP4-204ENST00000416417 TMEM217Q8N7C4 229 aa8.46□□□□□ -1.05
USP4-204ENST00000416417 DUSP18Q8NEJ0 188 aa8.46□□□□□ -1.05
USP4-204ENST00000416417 FNDC4Q9H6D8 234 aaPredicted RBP8.46□□□□□ -1.05
USP4-204ENST00000416417 VSIRQ9H7M9 311 aa8.46□□□□□ -1.05
USP4-204ENST00000416417 KMT2AQ03164 3969 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 C3orf85A0A1B0GTC6 90 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 KNCNA6PVL3 124 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 ATF4P18848 351 aaPredicted RBP8.45□□□□□ -1.06
USP4-204ENST00000416417 NPBWR1P48145 328 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 HOXA1P49639 335 aaPredicted RBP8.45□□□□□ -1.06
USP4-204ENST00000416417 RND3P61587 244 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 PAFAH1B2P68402 229 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 PRR20EP86478 221 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 PRR20CP86479 221 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 PRR20DP86480 221 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 PRR20BP86481 221 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 PRR20AP86496 221 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 TRIM16LQ309B1 348 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 FAAP20Q6NZ36 180 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 ZNF600Q6ZNG1 722 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 LHFPL1Q86WI0 220 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 C11orf45Q8TAV5 145 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 GINS3Q9BRX5 216 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 EXTL2Q9UBQ6 330 aa8.45□□□□□ -1.06
USP4-204ENST00000416417 RORCP51449 518 aa8.44□□□□□ -1.06
USP4-204ENST00000416417 CMC4P56277 68 aaPredicted RBP8.44□□□□□ -1.06
USP4-204ENST00000416417 RBMS2Q15434 407 aaKnown RBP8.44□□□□□ -1.06
USP4-204ENST00000416417 TIGITQ495A1 244 aa8.44□□□□□ -1.06
USP4-204ENST00000416417 SCGB2B2Q4G0G5 96 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms