RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 ZNF207O43670 478 aaKnown RBP14.29□□□□□ -0.12
SF3A1-202ENST00000411423 SCAF4O95104 1147 aaKnown RBP14.29□□□□□ -0.12
SF3A1-202ENST00000411423 CDS2O95674 445 aa14.29□□□□□ -0.12
SF3A1-202ENST00000411423 MT-CO2P00403 227 aa14.29□□□□□ -0.12
SF3A1-202ENST00000411423 RBMY1DP0C7P1 496 aaKnown RBP14.29□□□□□ -0.12
SF3A1-202ENST00000411423 SURF2Q15527 256 aaPredicted RBP14.29□□□□□ -0.12
SF3A1-202ENST00000411423 ZNF79Q15937 498 aa14.29□□□□□ -0.12
SF3A1-202ENST00000411423 Q56UQ5 140 aa14.29□□□□□ -0.12
SF3A1-202ENST00000411423 SELENOHQ8IZQ5 122 aaKnown RBP14.29□□□□□ -0.12
SF3A1-202ENST00000411423 OR1L6Q8NGR2 347 aa14.29□□□□□ -0.12
SF3A1-202ENST00000411423 TRIM63Q969Q1 353 aa14.29□□□□□ -0.12
SF3A1-202ENST00000411423 SLC2A8Q9NY64 477 aa14.29□□□□□ -0.12
SF3A1-202ENST00000411423 C14orf166Q9Y224 244 aaKnown RBP14.29□□□□□ -0.12
SF3A1-202ENST00000411423 ETV6P41212 452 aa14.28□□□□□ -0.12
SF3A1-202ENST00000411423 ELLP55199 621 aaPredicted RBP14.28□□□□□ -0.12
SF3A1-202ENST00000411423 PVRIGQ6DKI7 326 aa14.28□□□□□ -0.12
SF3A1-202ENST00000411423 ATP6V0BQ99437 205 aa14.28□□□□□ -0.12
SF3A1-202ENST00000411423 PALMDQ9NP74 551 aa14.28□□□□□ -0.12
SF3A1-202ENST00000411423 MRPL27Q9P0M9 148 aaKnown RBP14.28□□□□□ -0.12
SF3A1-202ENST00000411423 UFC1Q9Y3C8 167 aa14.28□□□□□ -0.12
SF3A1-202ENST00000411423 STARD9Q9P2P6 4700 aa14.27□□□□□ -0.12
SF3A1-202ENST00000411423 CCDC160A6NGH7 325 aa14.27□□□□□ -0.13
SF3A1-202ENST00000411423 INS-IGF2F8WCM5 200 aa14.27□□□□□ -0.13
SF3A1-202ENST00000411423 NDUFA4O00483 81 aa14.27□□□□□ -0.13
SF3A1-202ENST00000411423 RNASE2P10153 161 aaKnown RBP14.27□□□□□ -0.13
SF3A1-202ENST00000411423 KLF9Q13886 244 aaPredicted RBP14.27□□□□□ -0.13
SF3A1-202ENST00000411423 SPSB3Q6PJ21 355 aa14.27□□□□□ -0.13
SF3A1-202ENST00000411423 PINX1Q96BK5 328 aaKnown RBP14.27□□□□□ -0.13
SF3A1-202ENST00000411423 GPR146Q96CH1 333 aa14.27□□□□□ -0.13
SF3A1-202ENST00000411423 PRRT1Q99946 306 aa14.27□□□□□ -0.13
SF3A1-202ENST00000411423 TUBA4BQ9H853 241 aa14.27□□□□□ -0.13
SF3A1-202ENST00000411423 ZMAT4Q9H898 229 aa14.27□□□□□ -0.13
SF3A1-202ENST00000411423 RETNQ9HD89 108 aa14.27□□□□□ -0.13
SF3A1-202ENST00000411423 MRPL36Q9P0J6 103 aaKnown RBP14.27□□□□□ -0.13
SF3A1-202ENST00000411423 OR11H12B2RN74 326 aa14.26□□□□□ -0.13
SF3A1-202ENST00000411423 IFNA17P01571 189 aa14.26□□□□□ -0.13
SF3A1-202ENST00000411423 FCGR2BP31994 310 aaPredicted RBP14.26□□□□□ -0.13
SF3A1-202ENST00000411423 ERHP84090 104 aaKnown RBP14.26□□□□□ -0.13
SF3A1-202ENST00000411423 AARDQ4LEZ3 155 aa14.26□□□□□ -0.13
SF3A1-202ENST00000411423 SLC35G3Q8N808 338 aa14.26□□□□□ -0.13
SF3A1-202ENST00000411423 MARC2Q969Z3 335 aa14.26□□□□□ -0.13
SF3A1-202ENST00000411423 SRD5A3Q9H8P0 318 aa14.26□□□□□ -0.13
SF3A1-202ENST00000411423 B3GALNT1O75752 331 aa14.25□□□□□ -0.13
SF3A1-202ENST00000411423 MFAP4P55083 255 aa14.25□□□□□ -0.13
SF3A1-202ENST00000411423 SUPT4H1P63272 117 aaKnown RBP14.25□□□□□ -0.13
SF3A1-202ENST00000411423 TMEM187Q14656 261 aa14.25□□□□□ -0.13
SF3A1-202ENST00000411423 MLANAQ16655 118 aa14.25□□□□□ -0.13
SF3A1-202ENST00000411423 TMEM268Q5VZI3 342 aa14.25□□□□□ -0.13
SF3A1-202ENST00000411423 RBPMSQ93062 196 aaKnown RBP14.25□□□□□ -0.13
SF3A1-202ENST00000411423 RRNAD1Q96FB5 475 aaKnown RBP14.25□□□□□ -0.13
SF3A1-202ENST00000411423 CITED4Q96RK1 184 aa14.25□□□□□ -0.13
SF3A1-202ENST00000411423 C20orf24Q9BUV8 137 aa14.25□□□□□ -0.13
SF3A1-202ENST00000411423 FNDC4Q9H6D8 234 aaPredicted RBP14.25□□□□□ -0.13
SF3A1-202ENST00000411423 DAZ1Q9NQZ3 744 aaKnown RBP14.25□□□□□ -0.13
SF3A1-202ENST00000411423 ATG12O94817 140 aa14.24□□□□□ -0.13
SF3A1-202ENST00000411423 DHODHQ02127 395 aa14.24□□□□□ -0.13
SF3A1-202ENST00000411423 BSXQ3C1V8 233 aa14.24□□□□□ -0.13
SF3A1-202ENST00000411423 CCDC190Q86UF4 302 aa14.24□□□□□ -0.13
SF3A1-202ENST00000411423 MCUBQ9NWR8 336 aa14.24□□□□□ -0.13
SF3A1-202ENST00000411423 CACNG5Q9UF02 275 aa14.24□□□□□ -0.13
SF3A1-202ENST00000411423 TMEM56-RWDD3S4R434 201 aa14.24□□□□□ -0.13
SF3A1-202ENST00000411423 K7EMT4 169 aa14.23□□□□□ -0.13
SF3A1-202ENST00000411423 HOXA1P49639 335 aaPredicted RBP14.23□□□□□ -0.13
SF3A1-202ENST00000411423 PYDC2Q56P42 97 aa14.23□□□□□ -0.13
SF3A1-202ENST00000411423 RNASE11Q8TAA1 199 aaKnown RBP14.23□□□□□ -0.13
SF3A1-202ENST00000411423 GALNT14Q96FL9 552 aa14.23□□□□□ -0.13
SF3A1-202ENST00000411423 OR10C1Q96KK4 312 aa14.23□□□□□ -0.13
SF3A1-202ENST00000411423 TXN2Q99757 166 aa14.23□□□□□ -0.13
SF3A1-202ENST00000411423 HIPK2Q9H2X6 1198 aa14.23□□□□□ -0.13
SF3A1-202ENST00000411423 EDA2RQ9HAV5 297 aa14.23□□□□□ -0.13
SF3A1-202ENST00000411423 SCP2D1Q9UJQ7 156 aa14.23□□□□□ -0.13
SF3A1-202ENST00000411423 DYNC2H1Q8NCM8 4307 aaKnown RBP14.23□□□□□ -0.13
SF3A1-202ENST00000411423 IGHV3-49A0A0A0MS15 119 aa14.22□□□□□ -0.13
SF3A1-202ENST00000411423 TRAV25A0A0B4J276 109 aa14.22□□□□□ -0.13
SF3A1-202ENST00000411423 C15orf62A8K5M9 175 aa14.22□□□□□ -0.13
SF3A1-202ENST00000411423 NUPL2O15504 423 aaKnown RBP14.22□□□□□ -0.13
SF3A1-202ENST00000411423 NXPH3O95157 252 aa14.22□□□□□ -0.13
SF3A1-202ENST00000411423 FAM219AQ8IW50 185 aa14.22□□□□□ -0.13
SF3A1-202ENST00000411423 OR52B4Q8NGK2 314 aa14.22□□□□□ -0.13
SF3A1-202ENST00000411423 TMEM170AQ8WVE7 144 aa14.22□□□□□ -0.13
SF3A1-202ENST00000411423 FAM110AQ9BQ89 295 aa14.22□□□□□ -0.13
SF3A1-202ENST00000411423 SPATA25Q9BR10 227 aa14.22□□□□□ -0.13
SF3A1-202ENST00000411423 PDCD10Q9BUL8 212 aa14.22□□□□□ -0.13
SF3A1-202ENST00000411423 SACSQ9NZJ4 4579 aa14.22□□□□□ -0.13
SF3A1-202ENST00000411423 NBEAL2Q6ZNJ1 2754 aa14.22□□□□□ -0.13
SF3A1-202ENST00000411423 AKR1C4P17516 323 aa14.21□□□□□ -0.13
SF3A1-202ENST00000411423 SNCAP37840 140 aa14.21□□□□□ -0.13
SF3A1-202ENST00000411423 SPCS3P61009 180 aa14.21□□□□□ -0.13
SF3A1-202ENST00000411423 RBPMS2Q6ZRY4 209 aaKnown RBP14.21□□□□□ -0.13
SF3A1-202ENST00000411423 MUC7Q8TAX7 377 aa14.21□□□□□ -0.13
SF3A1-202ENST00000411423 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.21□□□□□ -0.13
SF3A1-202ENST00000411423 SMPXQ9UHP9 88 aa14.21□□□□□ -0.13
SF3A1-202ENST00000411423 CSMD3Q7Z407 3707 aa14.2□□□□□ -0.14
SF3A1-202ENST00000411423 CHEK1O14757 476 aa14.2□□□□□ -0.14
SF3A1-202ENST00000411423 TSPAN4O14817 238 aa14.2□□□□□ -0.14
SF3A1-202ENST00000411423 GNG7O60262 68 aa14.2□□□□□ -0.14
SF3A1-202ENST00000411423 TMEM50AO95807 157 aa14.2□□□□□ -0.14
SF3A1-202ENST00000411423 RELQ04864 619 aaPredicted RBP14.2□□□□□ -0.14
SF3A1-202ENST00000411423 TOMM20LQ6UXN7 152 aa14.2□□□□□ -0.14
SF3A1-202ENST00000411423 SLC16A13Q7RTY0 426 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms