RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 A0A1W2PPI3 338 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 MAP1LC3B2A6NCE7 125 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 IL6RP08887 468 aaPredicted RBP10.73□□□□□ -0.69
LIMS1-204ENST00000409441 CT45A6P0DMU7 189 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 CT45A5P0DMU8 189 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 CT45A7P0DMV0 189 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 BCL2P10415 239 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 ELLP55199 621 aaPredicted RBP10.73□□□□□ -0.69
LIMS1-204ENST00000409441 HSPE1P61604 102 aaKnown RBP10.73□□□□□ -0.69
LIMS1-204ENST00000409441 DLK1P80370 383 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 SPINK9Q5DT21 86 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 Q6YL49 198 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 SIGLECL1Q8N7X8 197 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 RXFP4Q8TDU9 374 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 NPCDR1Q9BY65 106 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 MRPL20Q9BYC9 149 aaKnown RBP10.73□□□□□ -0.69
LIMS1-204ENST00000409441 MAP1LC3BQ9GZQ8 125 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 SLC39A9Q9NUM3 307 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 PRNDQ9UKY0 176 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 ZNF257Q9Y2Q1 563 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 TRAV3A0A0B4J244 114 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 TIMM23O14925 209 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 IFNA10P01566 189 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 SNRNP70P08621 437 aaKnown RBP10.73□□□□□ -0.69
LIMS1-204ENST00000409441 CD1BP29016 333 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 BRS3P32247 399 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 HOXA1P49639 335 aaPredicted RBP10.73□□□□□ -0.69
LIMS1-204ENST00000409441 FFAR4Q5NUL3 377 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 ACSM6Q6P461 480 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 FAM122CQ6P4D5 195 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 LCN15Q6UWW0 184 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 RBMS3Q6XE24 437 aaKnown RBP10.73□□□□□ -0.69
LIMS1-204ENST00000409441 ETV3LQ6ZN32 361 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 VKORC1L1Q8N0U8 176 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 SSX3Q99909 188 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 NABP2Q9BQ15 211 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 ACTR3CQ9C0K3 210 aaPredicted RBP10.73□□□□□ -0.69
LIMS1-204ENST00000409441 ENY2Q9NPA8 101 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 GNG13Q9P2W3 67 aa10.73□□□□□ -0.69
LIMS1-204ENST00000409441 IGHV3-72A0A0B4J1Y9 119 aa10.72□□□□□ -0.69
LIMS1-204ENST00000409441 PRSS46E5RG02 174 aa10.72□□□□□ -0.69
LIMS1-204ENST00000409441 APOA2P02652 100 aa10.72□□□□□ -0.69
LIMS1-204ENST00000409441 FOLR2P14207 255 aa10.72□□□□□ -0.69
LIMS1-204ENST00000409441 CD24P25063 80 aa10.72□□□□□ -0.69
LIMS1-204ENST00000409441 ATP5IP56385 69 aaPredicted RBP10.72□□□□□ -0.69
LIMS1-204ENST00000409441 ACOT6Q3I5F7 207 aaPredicted RBP10.72□□□□□ -0.69
LIMS1-204ENST00000409441 RPP25LQ8N5L8 163 aaKnown RBP10.72□□□□□ -0.69
LIMS1-204ENST00000409441 OSR1Q8TAX0 266 aaPredicted RBP10.72□□□□□ -0.69
LIMS1-204ENST00000409441 PIFOQ8TCI5 191 aa10.72□□□□□ -0.69
LIMS1-204ENST00000409441 FKBP11Q9NYL4 201 aa10.72□□□□□ -0.69
LIMS1-204ENST00000409441 VAX2Q9UIW0 290 aa10.72□□□□□ -0.69
LIMS1-204ENST00000409441 ANK3Q12955 4377 aaKnown RBP10.71□□□□□ -0.69
LIMS1-204ENST00000409441 COLCA2A8K830 154 aa10.71□□□□□ -0.69
LIMS1-204ENST00000409441 FNDC10F2Z333 226 aa10.71□□□□□ -0.69
LIMS1-204ENST00000409441 UPK2O00526 184 aa10.71□□□□□ -0.69
LIMS1-204ENST00000409441 CYB5BO43169 146 aa10.71□□□□□ -0.69
LIMS1-204ENST00000409441 IGKV1D-33P01593 117 aa10.71□□□□□ -0.69
LIMS1-204ENST00000409441 IGKV1-33P01594 117 aa10.71□□□□□ -0.69
LIMS1-204ENST00000409441 IER3P46695 156 aa10.71□□□□□ -0.69
LIMS1-204ENST00000409441 HABP2Q14520 560 aaPredicted RBP10.71□□□□□ -0.69
LIMS1-204ENST00000409441 SSX7Q7RTT5 188 aa10.71□□□□□ -0.69
LIMS1-204ENST00000409441 CYB561D1Q8N8Q1 229 aa10.71□□□□□ -0.69
LIMS1-204ENST00000409441 OR10G9Q8NGN4 311 aa10.71□□□□□ -0.69
LIMS1-204ENST00000409441 OR10G7Q8NGN6 311 aa10.71□□□□□ -0.69
LIMS1-204ENST00000409441 CFHR4Q92496 578 aa10.71□□□□□ -0.69
LIMS1-204ENST00000409441 NIPSNAP3BQ9BS92 247 aa10.71□□□□□ -0.69
LIMS1-204ENST00000409441 KCNIP2Q9NS61 270 aa10.71□□□□□ -0.69
LIMS1-204ENST00000409441 BET1LQ9NYM9 111 aa10.71□□□□□ -0.69
LIMS1-204ENST00000409441 OR51B2Q9Y5P1 312 aa10.71□□□□□ -0.69
LIMS1-204ENST00000409441 H3BQ15 152 aa10.7□□□□□ -0.7
LIMS1-204ENST00000409441 IGHV4-59P01825 116 aa10.7□□□□□ -0.7
LIMS1-204ENST00000409441 FAM106CPP0CH98 169 aa10.7□□□□□ -0.7
LIMS1-204ENST00000409441 MC5RP33032 325 aa10.7□□□□□ -0.7
LIMS1-204ENST00000409441 AKIRIN2Q53H80 203 aa10.7□□□□□ -0.7
LIMS1-204ENST00000409441 SLC35E3Q7Z769 313 aa10.7□□□□□ -0.7
LIMS1-204ENST00000409441 OR5AN1Q8NGI8 311 aa10.7□□□□□ -0.7
LIMS1-204ENST00000409441 ZNF418Q8TF45 676 aaPredicted RBP10.7□□□□□ -0.7
LIMS1-204ENST00000409441 TVP23CQ96ET8 276 aa10.7□□□□□ -0.7
LIMS1-204ENST00000409441 PUS1Q9Y606 427 aaKnown RBP eCLIP10.7□□□□□ -0.7
LIMS1-204ENST00000409441 A0A087WWC5 75 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 ZFP92A6NM28 416 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 SEC14L6B5MCN3 397 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 H0YJW9 148 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 H3BUX3 64 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 RRHO14718 337 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 HOXA3O43365 443 aaPredicted RBP10.69□□□□□ -0.7
LIMS1-204ENST00000409441 KBTBD11O94819 623 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 MT-ND4LP03901 98 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 NPY1RP25929 384 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 OPRK1P41145 380 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 FGF8P55075 233 aaPredicted RBP10.69□□□□□ -0.7
LIMS1-204ENST00000409441 RPS16P62249 146 aaKnown RBP10.69□□□□□ -0.7
LIMS1-204ENST00000409441 PRCDQ00LT1 54 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 RNF212Q495C1 297 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 TMEM177Q53S58 311 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 SLC24A4Q8NFF2 622 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 SSMEM1Q8WWF3 244 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 MANBALQ9NQG1 85 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 TNFRSF19Q9NS68 423 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 MLXQ9UH92 298 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms