RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 OR5AN1Q8NGI8 311 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 TRAV2A0A0B4J234 112 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 IGHV1-46P01743 117 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 HSD52Q0P140 79 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 KIAA0040Q15053 153 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 WDR38Q5JTN6 314 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 SHISA2Q6UWI4 295 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 PRNTQ86SH4 94 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 ARHGAP5-AS1Q96IT6 56 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 PGLYRP3Q96LB9 341 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 V9GYH0 126 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 NLRC5Q86WI3 1866 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 C17orf51A8MQB3 221 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 PLPP2O43688 288 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 OR2H2O95918 312 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 CXCL2P19875 107 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 ADORA2A-AS1P86434 159 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 ZNF660Q6AZW8 331 aaPredicted RBP6.12□□□□□ -1.43
SCN9A-202ENST00000409435 A0A1B0GTL3 188 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 C7orf66A4D0T2 115 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 H0YL77 283 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 SNAI2O43623 268 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 LY6HO94772 140 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 NPPCP23582 126 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 DLX6P56179 175 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 FAM219AQ8IW50 185 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 SLC25A2Q9BXI2 301 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 KLF12Q9Y4X4 402 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 ABCA4P78363 2273 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 SLC25A20O43772 301 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 GAGE2AQ6NT46 116 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 TEPPQ6URK8 271 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 VGLL1Q99990 258 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 QTRT1Q9BXR0 403 aaKnown RBP6.12□□□□□ -1.43
SCN9A-202ENST00000409435 MS4A6AQ9H2W1 248 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 TRAV9-2A0A087WT02 112 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 GGTLC3B5MD39 225 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 J3QR06 171 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 COL8A2P25067 703 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 CTHRC1Q96CG8 243 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 CARHSP1Q9Y2V2 147 aaKnown RBP6.12□□□□□ -1.43
SCN9A-202ENST00000409435 CACNA1HO95180 2353 aa6.12□□□□□ -1.43
SCN9A-202ENST00000409435 GPR179Q6PRD1 2367 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 IGHV3-21A0A0B4J1V1 117 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 TRAV12-3A0A0B4J271 114 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 A0A1B0GU03 582 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 SNRPCP09234 159 aaKnown RBP6.11□□□□□ -1.43
SCN9A-202ENST00000409435 TMEM170BQ5T4T1 132 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 RPRMLQ8N4K4 120 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 ZNRF1Q8ND25 227 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 PAXXQ9BUH6 204 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 PI4KAP42356 2102 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 ASAH2BP0C7U1 165 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 PTGDSP41222 190 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 KIR3DL3Q8N743 410 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 ZNF114Q8NC26 417 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 PGLYRP4Q96LB8 373 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 NPDC1Q9NQX5 325 aaPredicted RBP6.11□□□□□ -1.43
SCN9A-202ENST00000409435 RP1P56715 2156 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 C4orf51C9J302 202 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 UBE2CO00762 179 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 CT83Q5H943 113 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 MINOS1Q5TGZ0 78 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 FAM90A1Q86YD7 464 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 ARPC1AQ92747 370 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 ORAI1Q96D31 301 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 ABHD1Q96SE0 405 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 MINOS1-NBL1R4GNA1 71 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 IQCF6A8MYZ5 107 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 M0R1W7 72 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 GRNP28799 593 aaKnown RBP6.11□□□□□ -1.43
SCN9A-202ENST00000409435 C12orf73Q69YU5 71 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 LCN12Q6JVE5 192 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 MRPL55Q7Z7F7 128 aaKnown RBP6.11□□□□□ -1.43
SCN9A-202ENST00000409435 ASCC3Q8N3C0 2202 aaKnown RBP6.11□□□□□ -1.43
SCN9A-202ENST00000409435 CKAP5Q14008 2032 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 CHD5Q8TDI0 1954 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 A0A0U1RQV5 110 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 NDUFS6O75380 124 aaKnown RBP6.11□□□□□ -1.43
SCN9A-202ENST00000409435 PSG7Q13046 419 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 SPINK9Q5DT21 86 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 VAX1Q5SQQ9 334 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 KIR2DL4Q99706 377 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 CHST5Q9GZS9 411 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 EPDR1Q9UM22 224 aa6.11□□□□□ -1.43
SCN9A-202ENST00000409435 TRAV9-1A0A075B6T8 112 aa6.1□□□□□ -1.43
SCN9A-202ENST00000409435 ERVK11-1P61568 191 aa6.1□□□□□ -1.43
SCN9A-202ENST00000409435 IFITM2Q01629 132 aa6.1□□□□□ -1.43
SCN9A-202ENST00000409435 ZNF585BQ52M93 769 aa6.1□□□□□ -1.43
SCN9A-202ENST00000409435 TMEM219Q86XT9 240 aa6.1□□□□□ -1.43
SCN9A-202ENST00000409435 C10orf111Q8N326 155 aa6.1□□□□□ -1.43
SCN9A-202ENST00000409435 VENTXO95231 258 aa6.1□□□□□ -1.43
SCN9A-202ENST00000409435 LY6G6DO95868 133 aa6.1□□□□□ -1.43
SCN9A-202ENST00000409435 KIAA1644Q3SXP7 199 aa6.1□□□□□ -1.43
SCN9A-202ENST00000409435 ZBTB34Q8NCN2 500 aa6.1□□□□□ -1.43
SCN9A-202ENST00000409435 IFITM1P13164 125 aa6.1□□□□□ -1.43
SCN9A-202ENST00000409435 KLF9Q13886 244 aaPredicted RBP6.1□□□□□ -1.43
SCN9A-202ENST00000409435 NXT2Q9NPJ8 142 aaKnown RBP6.1□□□□□ -1.43
SCN9A-202ENST00000409435 KLK5Q9Y337 293 aaPredicted RBP6.1□□□□□ -1.43
SCN9A-202ENST00000409435 LINC00312Q9Y6C7 94 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 122.1 ms