RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 TRAV9-2A0A087WT02 112 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 SPAARA0A1B0GVQ0 90 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 SP1P08047 785 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 CRYBB3P26998 211 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 GPR183P32249 361 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 GNB1P62873 340 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 CRIP3Q6Q6R5 217 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 LOC102723996A0A087X1L8 192 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 FAM90A10PA6NDY2 464 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 FAM90A18PA6NE21 464 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 FAM90A16PA6NEW6 464 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 FAM90A20PA6NIJ5 464 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 FAM90A8PA6NJQ4 464 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 FAM90A7PA6NKC0 464 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 FAM90A22PA8MWA6 464 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 FAM90A12PA8MX19 464 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 FAM90A5PA8MXJ8 464 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 FAM90A23PA8MXZ1 464 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 IGKV1-39P01597 117 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 IGKV1D-39P04432 117 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 FAM90A15PP0C7V4 464 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 FAM90A13PP0C7W8 464 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 FAM90A14PP0C7W9 464 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 FAM90A24PP0C7X0 464 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 RPL31P62899 125 aaKnown RBP9.98□□□□□ -0.81
HMGB1-206ENST00000405805 TMEM97Q5BJF2 176 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 ZNF645Q8N7E2 425 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 SSC4DQ8WTU2 575 aa9.98□□□□□ -0.81
HMGB1-206ENST00000405805 IGHV2OR16-5A0A0B4J2B6 119 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 hDV102S1A0JD36 115 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 PRDX2P32119 198 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 ASPHD1Q5U4P2 390 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 PQLC2Q6ZP29 291 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 Q6ZPA2 131 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 TMEM144Q7Z5S9 345 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 RNASEH2CQ8TDP1 164 aaKnown RBP9.97□□□□□ -0.81
HMGB1-206ENST00000405805 LSM10Q969L4 123 aaKnown RBP9.97□□□□□ -0.81
HMGB1-206ENST00000405805 ZNF703Q9H7S9 590 aaPredicted RBP9.97□□□□□ -0.81
HMGB1-206ENST00000405805 YLPM1P49750 1951 aaKnown RBP9.97□□□□□ -0.81
HMGB1-206ENST00000405805 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.97□□□□□ -0.811e-6■■■■□ 22.6
HMGB1-206ENST00000405805 HLA-DRB1P01911 266 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 B3GALT5-AS1P59052 145 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 RHOBP62745 196 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 SLC35E4Q6ICL7 350 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 BHLHA15Q7RTS1 189 aaPredicted RBP9.97□□□□□ -0.81
HMGB1-206ENST00000405805 PSMG3Q9BT73 122 aaPredicted RBP9.97□□□□□ -0.81
HMGB1-206ENST00000405805 METRNQ9UJH8 293 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 C3orf79P0CE67 100 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 GZMHP20718 246 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 LCN2P80188 198 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 DEFB109BQ30KR1 87 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 LHFPL4Q7Z7J7 247 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 PNKDQ8N490 385 aa9.97□□□□□ -0.81
HMGB1-206ENST00000405805 IGHV1-69-2A0A0G2JMI3 117 aa9.96□□□□□ -0.81
HMGB1-206ENST00000405805 NTN3O00634 580 aaPredicted RBP9.96□□□□□ -0.81
HMGB1-206ENST00000405805 ORM2P19652 201 aa9.96□□□□□ -0.81
HMGB1-206ENST00000405805 TAS2R45P59539 299 aa9.96□□□□□ -0.81
HMGB1-206ENST00000405805 ZNF585BQ52M93 769 aa9.96□□□□□ -0.81
HMGB1-206ENST00000405805 FGF23Q9GZV9 251 aaPredicted RBP9.96□□□□□ -0.81
HMGB1-206ENST00000405805 A0A1W2PRD5 423 aa9.96□□□□□ -0.81
HMGB1-206ENST00000405805 A0A1W2PRF3 423 aa9.96□□□□□ -0.81
HMGB1-206ENST00000405805 A0A1W2PRM7 423 aa9.96□□□□□ -0.81
HMGB1-206ENST00000405805 C9orf172C9J069 976 aa9.96□□□□□ -0.81
HMGB1-206ENST00000405805 PSMB2P49721 201 aa9.96□□□□□ -0.81
HMGB1-206ENST00000405805 HIF1ANQ9NWT6 349 aa9.96□□□□□ -0.81
HMGB1-206ENST00000405805 RNF115Q9Y4L5 304 aa9.96□□□□□ -0.81
HMGB1-206ENST00000405805 H7C2G1 150 aa9.96□□□□□ -0.82
HMGB1-206ENST00000405805 MYOD1P15172 320 aa9.96□□□□□ -0.82
HMGB1-206ENST00000405805 CSN1S1P47710 185 aa9.96□□□□□ -0.82
HMGB1-206ENST00000405805 TRIP6Q15654 476 aaKnown RBP9.96□□□□□ -0.82
HMGB1-206ENST00000405805 TMEM136Q6ZRR5 245 aa9.96□□□□□ -0.82
HMGB1-206ENST00000405805 LYPD6BQ8NI32 183 aa9.96□□□□□ -0.82
HMGB1-206ENST00000405805 CGAP01215 116 aa9.96□□□□□ -0.82
HMGB1-206ENST00000405805 CLDN18P56856 261 aa9.96□□□□□ -0.82
HMGB1-206ENST00000405805 PRB3Q04118 309 aaPredicted RBP9.96□□□□□ -0.82
HMGB1-206ENST00000405805 HAPLN4Q86UW8 402 aa9.96□□□□□ -0.82
HMGB1-206ENST00000405805 SAP30LQ9HAJ7 183 aa9.96□□□□□ -0.82
HMGB1-206ENST00000405805 SH2D2AQ9NP31 389 aa9.96□□□□□ -0.82
HMGB1-206ENST00000405805 B5MCH6 92 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 TMEM250H0YL14 139 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 SMIM13P0DJ93 91 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 OPRK1P41145 380 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 CRYBA4P53673 196 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 Q6ZWC4 215 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 CXXC4Q9H2H0 198 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 MS4A5Q9H3V2 200 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 MBNL3Q9NUK0 354 aaKnown RBP9.95□□□□□ -0.82
HMGB1-206ENST00000405805 COL6A3P12111 3177 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 A1L4Q6 167 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 TMPRSS2O15393 492 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 NKX2-8O15522 239 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 IGLV3-1P01715 115 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 LINC00869P0C866 280 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 IGLC2P0DOY2 106 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 IGLC3P0DOY3 106 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 UBE2L3P68036 154 aaKnown RBP9.95□□□□□ -0.82
HMGB1-206ENST00000405805 HSD52Q0P140 79 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 DECR2Q9NUI1 292 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 ZNF257Q9Y2Q1 563 aa9.95□□□□□ -0.82
HMGB1-206ENST00000405805 IGHV3-72A0A0B4J1Y9 119 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms