RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 PARD6GQ9BYG4 376 aaPredicted RBP15.3■□□□□ 0.04
USP48-204ENST00000400301 YLPM1P49750 1951 aaKnown RBP15.3■□□□□ 0.04
USP48-204ENST00000400301 SPATA31B1PQ5VZV4 182 aa15.3■□□□□ 0.04
USP48-204ENST00000400301 OR10W1Q8NGF6 305 aa15.3■□□□□ 0.04
USP48-204ENST00000400301 PRSS3P2Q8NHM4 247 aa15.3■□□□□ 0.04
USP48-204ENST00000400301 PRB3Q04118 309 aaPredicted RBP15.29■□□□□ 0.04
USP48-204ENST00000400301 LINC01551Q86U37 167 aa15.29■□□□□ 0.04
USP48-204ENST00000400301 TMUB1Q9BVT8 246 aa15.29■□□□□ 0.04
USP48-204ENST00000400301 SEPSECSQ9HD40 501 aaKnown RBP15.29■□□□□ 0.04
USP48-204ENST00000400301 B9A039 149 aa15.29■□□□□ 0.04
USP48-204ENST00000400301 Q6ZN92 141 aa15.29■□□□□ 0.04
USP48-204ENST00000400301 APOBEC3AP31941 199 aaPredicted RBP15.29■□□□□ 0.04
USP48-204ENST00000400301 PYY3Q5JQD4 70 aa15.29■□□□□ 0.04
USP48-204ENST00000400301 A0A1W2PNU3 283 aaPredicted RBP15.28■□□□□ 0.04
USP48-204ENST00000400301 PNKDQ8N490 385 aa15.28■□□□□ 0.04
USP48-204ENST00000400301 IGKV1D-33P01593 117 aa15.28■□□□□ 0.04
USP48-204ENST00000400301 IGKV1-33P01594 117 aa15.28■□□□□ 0.04
USP48-204ENST00000400301 CD99P14209 185 aa15.28■□□□□ 0.04
USP48-204ENST00000400301 SCNM1Q9BWG6 230 aa15.28■□□□□ 0.04
USP48-204ENST00000400301 CLEC3BP05452 202 aa15.28■□□□□ 0.04
USP48-204ENST00000400301 CD69Q07108 199 aa15.28■□□□□ 0.04
USP48-204ENST00000400301 RPRMLQ8N4K4 120 aa15.28■□□□□ 0.04
USP48-204ENST00000400301 FOXA2Q9Y261 457 aaPredicted RBP15.28■□□□□ 0.04
USP48-204ENST00000400301 TEX38Q6PEX7 206 aa15.27■□□□□ 0.04
USP48-204ENST00000400301 SSX7Q7RTT5 188 aa15.27■□□□□ 0.04
USP48-204ENST00000400301 TEX50A0A1B0GTY4 177 aa15.27■□□□□ 0.04
USP48-204ENST00000400301 NUP210LQ5VU65 1888 aa15.27■□□□□ 0.03
USP48-204ENST00000400301 AMY1AP04745 511 aa15.27■□□□□ 0.03
USP48-204ENST00000400301 FAM87AP0C7U9 286 aa15.27■□□□□ 0.03
USP48-204ENST00000400301 C10orf55Q5SWW7 151 aa15.27■□□□□ 0.03
USP48-204ENST00000400301 EAF1Q96JC9 268 aaPredicted RBP15.27■□□□□ 0.03
USP48-204ENST00000400301 AGMATQ9BSE5 352 aa15.27■□□□□ 0.03
USP48-204ENST00000400301 SPRY4Q9C004 299 aa15.27■□□□□ 0.03
USP48-204ENST00000400301 RNASE7Q9H1E1 156 aaKnown RBP15.27■□□□□ 0.03
USP48-204ENST00000400301 FBXL15Q9H469 300 aa15.27■□□□□ 0.03
USP48-204ENST00000400301 GPX4P36969 197 aaPredicted RBP15.26■□□□□ 0.03
USP48-204ENST00000400301 TMSB15BA0A087X1C1 80 aa15.26■□□□□ 0.03
USP48-204ENST00000400301 F2RL2O00254 374 aa15.26■□□□□ 0.03
USP48-204ENST00000400301 TCAPO15273 167 aa15.26■□□□□ 0.03
USP48-204ENST00000400301 TNFSF13O75888 250 aa15.26■□□□□ 0.03
USP48-204ENST00000400301 REC114Q7Z4M0 266 aa15.26■□□□□ 0.03
USP48-204ENST00000400301 NBEAP1P0C6P0 100 aa15.26■□□□□ 0.03
USP48-204ENST00000400301 Q6ZS92 163 aa15.26■□□□□ 0.03
USP48-204ENST00000400301 GBGT1Q8N5D6 347 aa15.26■□□□□ 0.03
USP48-204ENST00000400301 CBLN4Q9NTU7 201 aa15.26■□□□□ 0.03
USP48-204ENST00000400301 C1RLQ9NZP8 487 aa15.26■□□□□ 0.03
USP48-204ENST00000400301 TRBV9A0A0B4J1U6 114 aa15.25■□□□□ 0.03
USP48-204ENST00000400301 GPR6P46095 362 aaPredicted RBP15.25■□□□□ 0.03
USP48-204ENST00000400301 TMEM177Q53S58 311 aa15.25■□□□□ 0.03
USP48-204ENST00000400301 SCGB2A2Q13296 93 aa15.25■□□□□ 0.03
USP48-204ENST00000400301 BPIFA4PQ86YQ2 179 aa15.25■□□□□ 0.03
USP48-204ENST00000400301 RNASEH2CQ8TDP1 164 aaKnown RBP15.25■□□□□ 0.03
USP48-204ENST00000400301 Q6ZPA2 131 aa15.25■□□□□ 0.03
USP48-204ENST00000400301 EML5Q05BV3 1969 aa15.25■□□□□ 0.03
USP48-204ENST00000400301 PPOXP50336 477 aa15.24■□□□□ 0.03
USP48-204ENST00000400301 RIGQ13278 110 aa15.24■□□□□ 0.03
USP48-204ENST00000400301 CCDC144NLQ6NUI1 221 aa15.24■□□□□ 0.03
USP48-204ENST00000400301 FAM169BQ8N8A8 192 aa15.24■□□□□ 0.03
USP48-204ENST00000400301 RBM14Q96PK6 669 aaKnown RBP15.24■□□□□ 0.03
USP48-204ENST00000400301 GAFA1Q96PS6 74 aa15.24■□□□□ 0.03
USP48-204ENST00000400301 AMBPP02760 352 aa15.24■□□□□ 0.03
USP48-204ENST00000400301 ZNF257Q9Y2Q1 563 aa15.24■□□□□ 0.03
USP48-204ENST00000400301 PEX7O00628 323 aa15.24■□□□□ 0.03
USP48-204ENST00000400301 RNASE6Q93091 150 aaKnown RBP15.24■□□□□ 0.03
USP48-204ENST00000400301 BET1LQ9NYM9 111 aa15.24■□□□□ 0.03
USP48-204ENST00000400301 LYNX1G3V0Z9 82 aa15.24■□□□□ 0.03
USP48-204ENST00000400301 LIPFP07098 398 aa15.24■□□□□ 0.03
USP48-204ENST00000400301 LYNX1P0DP58 116 aa15.24■□□□□ 0.03
USP48-204ENST00000400301 PYYP10082 97 aa15.24■□□□□ 0.03
USP48-204ENST00000400301 CA7P43166 264 aa15.24■□□□□ 0.03
USP48-204ENST00000400301 UBTD1Q9HAC8 227 aa15.24■□□□□ 0.03
USP48-204ENST00000400301 MED12LQ86YW9 2145 aa15.23■□□□□ 0.03
USP48-204ENST00000400301 FOXH1O75593 365 aa15.23■□□□□ 0.03
USP48-204ENST00000400301 PGLYRP4Q96LB8 373 aa15.23■□□□□ 0.03
USP48-204ENST00000400301 ADMP35318 185 aa15.23■□□□□ 0.03
USP48-204ENST00000400301 COMPP49747 757 aaPredicted RBP15.23■□□□□ 0.03
USP48-204ENST00000400301 IGKV1-16P04430 117 aa15.23■□□□□ 0.03
USP48-204ENST00000400301 FCGR2BP31994 310 aaPredicted RBP15.23■□□□□ 0.03
USP48-204ENST00000400301 JOSD1Q15040 202 aaPredicted RBP15.23■□□□□ 0.03
USP48-204ENST00000400301 ZNF788Q6ZQV5 615 aa15.23■□□□□ 0.03
USP48-204ENST00000400301 C11orf53Q8IXP5 236 aa15.22■□□□□ 0.03
USP48-204ENST00000400301 LPAR2Q9HBW0 351 aa15.22■□□□□ 0.03
USP48-204ENST00000400301 ZNRD1Q9P1U0 126 aa15.22■□□□□ 0.03
USP48-204ENST00000400301 MALRD1Q5VYJ5 2156 aa15.22■□□□□ 0.03
USP48-204ENST00000400301 IGLV1-44P01699 117 aa15.22■□□□□ 0.03
USP48-204ENST00000400301 C5orf17Q8NAS9 161 aa15.22■□□□□ 0.03
USP48-204ENST00000400301 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.22■□□□□ 0.03
USP48-204ENST00000400301 C15orf65H3BRN8 121 aa15.22■□□□□ 0.03
USP48-204ENST00000400301 ECSCRQ19T08 205 aa15.22■□□□□ 0.03
USP48-204ENST00000400301 RANBP2P49792 3224 aaKnown RBP15.22■□□□□ 0.03
USP48-204ENST00000400301 A0A1W2PRE2 83 aa15.21■□□□□ 0.03
USP48-204ENST00000400301 TMEM200BQ69YZ2 307 aa15.21■□□□□ 0.03
USP48-204ENST00000400301 GOLT1AQ6ZVE7 132 aa15.21■□□□□ 0.03
USP48-204ENST00000400301 CEP192Q8TEP8 1941 aa15.21■□□□□ 0.03
USP48-204ENST00000400301 LAMA2P24043 3122 aaKnown RBP15.21■□□□□ 0.03
USP48-204ENST00000400301 TRAV5A0A0B4J249 113 aa15.21■□□□□ 0.03
USP48-204ENST00000400301 A0A1B0GV90 55 aa15.21■□□□□ 0.03
USP48-204ENST00000400301 IGHV2-5P01817 119 aa15.21■□□□□ 0.03
USP48-204ENST00000400301 UCNP55089 124 aa15.21■□□□□ 0.03
USP48-204ENST00000400301 CACNA1BQ00975 2339 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms