RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 NEUROG1Q92886 237 aa9.46□□□□□ -0.89
TTC28-201ENST00000397906 TBX6O95947 436 aaPredicted RBP9.46□□□□□ -0.89
TTC28-201ENST00000397906 RPLP1P05386 114 aaKnown RBP9.46□□□□□ -0.89
TTC28-201ENST00000397906 TIMP3P35625 211 aa9.46□□□□□ -0.89
TTC28-201ENST00000397906 FXYD7P58549 80 aa9.46□□□□□ -0.89
TTC28-201ENST00000397906 HBBP68871 147 aa9.46□□□□□ -0.89
TTC28-201ENST00000397906 BEND2Q8NDZ0 799 aa9.46□□□□□ -0.89
TTC28-201ENST00000397906 SSC4DQ8WTU2 575 aa9.46□□□□□ -0.89
TTC28-201ENST00000397906 HEATR5BQ9P2D3 2071 aa9.46□□□□□ -0.89
TTC28-201ENST00000397906 IGHV3-73A0A0B4J1V6 119 aa9.46□□□□□ -0.9
TTC28-201ENST00000397906 STAG3L2P0CL84 134 aa9.46□□□□□ -0.9
TTC28-201ENST00000397906 STPG2Q8N412 459 aa9.46□□□□□ -0.9
TTC28-201ENST00000397906 MPTX1A8MV57 137 aa9.46□□□□□ -0.9
TTC28-201ENST00000397906 SLC17A3O00476 420 aa9.46□□□□□ -0.9
TTC28-201ENST00000397906 TXNDC17Q9BRA2 123 aa9.46□□□□□ -0.9
TTC28-201ENST00000397906 TM2D1Q9BX74 207 aa9.46□□□□□ -0.9
TTC28-201ENST00000397906 TRAV41A0A0B4J266 112 aa9.46□□□□□ -0.9
TTC28-201ENST00000397906 H3BUX3 64 aa9.46□□□□□ -0.9
TTC28-201ENST00000397906 IFITM3Q01628 133 aa9.46□□□□□ -0.9
TTC28-201ENST00000397906 ZNF329Q86UD4 541 aa9.46□□□□□ -0.9
TTC28-201ENST00000397906 ST6GALNAC3Q8NDV1 305 aa9.46□□□□□ -0.9
TTC28-201ENST00000397906 COPS9Q8WXC6 57 aa9.46□□□□□ -0.9
TTC28-201ENST00000397906 MT-ND6P03923 174 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 SELLP14151 372 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 C20orf204Q6ZNR8 217 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 GGNQ86UU5 652 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 CRIPAKQ8N1N5 446 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 IGHV2-26A0A0B4J1V2 119 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 ZNF497Q6ZNH5 498 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 KLHL30-AS1Q8NEE0 82 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 HIST1H2BAQ96A08 127 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 OR11H4Q8NGC9 324 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 OR10W1Q8NGF6 305 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 OR9G4Q8NGQ1 327 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 ARHGEF17Q96PE2 2063 aaPredicted RBP9.45□□□□□ -0.9
TTC28-201ENST00000397906 TMEM200BQ69YZ2 307 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 FMC1Q96HJ9 113 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 TRAV8-6A0A0B4J262 113 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 B4DSR2 109 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 CD200R1LQ6Q8B3 271 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 PAX8Q06710 450 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 RNF125Q96EQ8 232 aa9.45□□□□□ -0.9
TTC28-201ENST00000397906 BPESC1Q9GZL8 116 aa9.44□□□□□ -0.9
TTC28-201ENST00000397906 TICRRQ7Z2Z1 1910 aa9.44□□□□□ -0.9
TTC28-201ENST00000397906 ZNF660Q6AZW8 331 aaPredicted RBP9.44□□□□□ -0.9
TTC28-201ENST00000397906 SOX21Q9Y651 276 aaPredicted RBP9.44□□□□□ -0.9
TTC28-201ENST00000397906 PPIFP30405 207 aaKnown RBP9.44□□□□□ -0.9
TTC28-201ENST00000397906 PRELID3AQ96N28 172 aa9.44□□□□□ -0.9
TTC28-201ENST00000397906 MSRB2Q9Y3D2 182 aa9.44□□□□□ -0.9
TTC28-201ENST00000397906 NDPQ00604 133 aa9.44□□□□□ -0.9
TTC28-201ENST00000397906 LINC00114Q6XXX2 140 aa9.44□□□□□ -0.9
TTC28-201ENST00000397906 SIGLEC15Q6ZMC9 328 aa9.44□□□□□ -0.9
TTC28-201ENST00000397906 RNASEH2CQ8TDP1 164 aaKnown RBP9.44□□□□□ -0.9
TTC28-201ENST00000397906 LEPP41159 167 aa9.44□□□□□ -0.9
TTC28-201ENST00000397906 IGKV1D-13A0A0B4J2D9 117 aa9.44□□□□□ -0.9
TTC28-201ENST00000397906 IGKV1-13P0DP09 117 aa9.44□□□□□ -0.9
TTC28-201ENST00000397906 CBLN1P23435 193 aa9.44□□□□□ -0.9
TTC28-201ENST00000397906 GFI1BQ5VTD9 330 aa9.44□□□□□ -0.9
TTC28-201ENST00000397906 C11orf91Q3C1V1 193 aa9.44□□□□□ -0.9
TTC28-201ENST00000397906 LCNL1Q6ZST4 164 aa9.44□□□□□ -0.9
TTC28-201ENST00000397906 Q96MF0 132 aa9.44□□□□□ -0.9
TTC28-201ENST00000397906 ATP5G3P48201 142 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 Q5BKY6 102 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 OR10J3Q5JRS4 329 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 Q5PR19 223 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 SCGB3A1Q96QR1 104 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 ZSWIM8A7E2V4 1837 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 DNAL4O96015 105 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 C2orf68Q2NKX9 166 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 UPK2O00526 184 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 YPEL1O60688 119 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 YPEL2Q96QA6 119 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 MRPL13Q9BYD1 178 aaKnown RBP9.43□□□□□ -0.9
TTC28-201ENST00000397906 DANCRP0C864 163 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 PAX1P15863 534 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 RPL15P61313 204 aaKnown RBP9.43□□□□□ -0.9
TTC28-201ENST00000397906 PLSCR4Q9NRQ2 329 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 MRPS16Q9Y3D3 137 aaKnown RBP9.43□□□□□ -0.9
TTC28-201ENST00000397906 ZDBF2Q9HCK1 2354 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 FER1L6-AS1Q8NA97 138 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 KCNS1Q96KK3 526 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 CACNA1IQ9P0X4 2223 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 RTBDNQ9BSG5 229 aaPredicted RBP9.43□□□□□ -0.9
TTC28-201ENST00000397906 C15orf61A6NNL5 157 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 NDUFA3O95167 84 aa9.43□□□□□ -0.9
TTC28-201ENST00000397906 TBL2Q9Y4P3 447 aaKnown RBP9.42□□□□□ -0.9
TTC28-201ENST00000397906 A0A1B0GTI1 187 aa9.42□□□□□ -0.9
TTC28-201ENST00000397906 PAPPA-AS1Q5QFB9 102 aa9.42□□□□□ -0.9
TTC28-201ENST00000397906 C15orf32Q32M92 178 aa9.42□□□□□ -0.9
TTC28-201ENST00000397906 JKAMPQ9P055 326 aa9.42□□□□□ -0.9
TTC28-201ENST00000397906 PSCAO43653 123 aa9.42□□□□□ -0.9
TTC28-201ENST00000397906 CD55P08174 381 aa9.42□□□□□ -0.9
TTC28-201ENST00000397906 SMDT1Q9H4I9 107 aa9.42□□□□□ -0.9
TTC28-201ENST00000397906 LINC01356Q8N9X3 169 aa9.42□□□□□ -0.9
TTC28-201ENST00000397906 LRTM2Q8N967 370 aa9.42□□□□□ -0.9
TTC28-201ENST00000397906 FBLIM1Q8WUP2 373 aa9.42□□□□□ -0.9
TTC28-201ENST00000397906 IGHV3-53P01767 116 aa9.42□□□□□ -0.9
TTC28-201ENST00000397906 FAM209BQ5JX69 171 aa9.42□□□□□ -0.9
TTC28-201ENST00000397906 MST1P26927 711 aa9.42□□□□□ -0.9
TTC28-201ENST00000397906 GPX4P36969 197 aaPredicted RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms