RNA–Protein interactions for RNA: ENST00000397901.7

CHMP1A-201, Transcript of charged multivesicular body protein 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP1A, Length 2,483 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-201ENST00000397901 CD5LO43866 347 aa13.14□□□□□ -0.31
CHMP1A-201ENST00000397901 PTPRBP23467 1997 aa13.14□□□□□ -0.31
CHMP1A-201ENST00000397901 PAX2Q02962 417 aa13.14□□□□□ -0.31
CHMP1A-201ENST00000397901 ZNF718Q3SXZ3 478 aa13.14□□□□□ -0.31
CHMP1A-201ENST00000397901 EBLN2Q6P2I7 272 aa13.14□□□□□ -0.31
CHMP1A-201ENST00000397901 CNEP1R1Q8N9A8 125 aa13.14□□□□□ -0.31
CHMP1A-201ENST00000397901 PRR7Q8TB68 274 aa13.14□□□□□ -0.31
CHMP1A-201ENST00000397901 MUC21A0A0G2JKD1 596 aa13.13□□□□□ -0.31
CHMP1A-201ENST00000397901 MUC21A0A140T8X8 626 aa13.13□□□□□ -0.31
CHMP1A-201ENST00000397901 MPDU1O75352 247 aa13.13□□□□□ -0.31
CHMP1A-201ENST00000397901 SAP30O75446 220 aa13.13□□□□□ -0.31
CHMP1A-201ENST00000397901 APCSP02743 223 aa13.13□□□□□ -0.31
CHMP1A-201ENST00000397901 MUC21Q5SSG8 566 aa13.13□□□□□ -0.31
CHMP1A-201ENST00000397901 WDR31Q8NA23 367 aa13.13□□□□□ -0.31
CHMP1A-201ENST00000397901 C11orf52Q96A22 123 aa13.13□□□□□ -0.31
CHMP1A-201ENST00000397901 PEF1Q9UBV8 284 aaKnown RBP13.13□□□□□ -0.31
CHMP1A-201ENST00000397901 G3V4G9 280 aa13.13□□□□□ -0.31
CHMP1A-201ENST00000397901 HSBP1O75506 76 aa13.13□□□□□ -0.31
CHMP1A-201ENST00000397901 VDAC2P45880 294 aaPredicted RBP13.13□□□□□ -0.31
CHMP1A-201ENST00000397901 C18orf32Q8TCD1 76 aa13.13□□□□□ -0.31
CHMP1A-201ENST00000397901 LRRC29Q8WV35 223 aa13.13□□□□□ -0.31
CHMP1A-201ENST00000397901 TET2Q6N021 2002 aaPredicted RBP13.12□□□□□ -0.31
CHMP1A-201ENST00000397901 M0R2Z0 102 aa13.12□□□□□ -0.31
CHMP1A-201ENST00000397901 GFRA3O60609 400 aa13.12□□□□□ -0.31
CHMP1A-201ENST00000397901 IGLC1P0CG04 106 aa13.12□□□□□ -0.31
CHMP1A-201ENST00000397901 ERVK-16P61578 105 aa13.12□□□□□ -0.31
CHMP1A-201ENST00000397901 PIP4P1Q86T03 277 aa13.12□□□□□ -0.31
CHMP1A-201ENST00000397901 PRSS46E5RG02 174 aa13.12□□□□□ -0.31
CHMP1A-201ENST00000397901 OR7C2O60412 319 aa13.12□□□□□ -0.31
CHMP1A-201ENST00000397901 WISP2O76076 250 aa13.12□□□□□ -0.31
CHMP1A-201ENST00000397901 ADH4P08319 380 aa13.12□□□□□ -0.31
CHMP1A-201ENST00000397901 TNXAQ16473 311 aa13.12□□□□□ -0.31
CHMP1A-201ENST00000397901 INO80CQ6PI98 192 aaPredicted RBP13.12□□□□□ -0.31
CHMP1A-201ENST00000397901 FER1L6-AS1Q8NA97 138 aa13.12□□□□□ -0.31
CHMP1A-201ENST00000397901 TRIB1Q96RU8 372 aa13.12□□□□□ -0.31
CHMP1A-201ENST00000397901 TTC28Q96AY4 2481 aa13.11□□□□□ -0.31
CHMP1A-201ENST00000397901 FOXH1O75593 365 aa13.11□□□□□ -0.31
CHMP1A-201ENST00000397901 PRDX2P32119 198 aa13.11□□□□□ -0.31
CHMP1A-201ENST00000397901 SARAFQ96BY9 339 aa13.11□□□□□ -0.31
CHMP1A-201ENST00000397901 C1orf159Q96HA4 380 aa13.11□□□□□ -0.31
CHMP1A-201ENST00000397901 TMEM140Q9NV12 185 aa13.11□□□□□ -0.31
CHMP1A-201ENST00000397901 C2orf70A6NJV1 201 aa13.11□□□□□ -0.31
CHMP1A-201ENST00000397901 GCHFRP30047 84 aa13.11□□□□□ -0.31
CHMP1A-201ENST00000397901 RBPJQ06330 500 aa13.11□□□□□ -0.31
CHMP1A-201ENST00000397901 SLC25A34Q6PIV7 304 aa13.11□□□□□ -0.31
CHMP1A-201ENST00000397901 ST6GALNAC6Q969X2 333 aa13.11□□□□□ -0.31
CHMP1A-201ENST00000397901 OSTCQ9NRP0 149 aa13.11□□□□□ -0.31
CHMP1A-201ENST00000397901 CACNA1HO95180 2353 aa13.1□□□□□ -0.31
CHMP1A-201ENST00000397901 IGHV3OR15-7A0A075B7D8 119 aa13.1□□□□□ -0.31
CHMP1A-201ENST00000397901 TRAV8-6A0A0B4J262 113 aa13.1□□□□□ -0.31
CHMP1A-201ENST00000397901 ZNF134P52741 427 aa13.1□□□□□ -0.31
CHMP1A-201ENST00000397901 UTF1Q5T230 341 aa13.1□□□□□ -0.31
CHMP1A-201ENST00000397901 WFDC8Q8IUA0 241 aa13.1□□□□□ -0.31
CHMP1A-201ENST00000397901 LEAP2Q969E1 77 aa13.1□□□□□ -0.31
CHMP1A-201ENST00000397901 DUSP13Q9UII6 198 aa13.1□□□□□ -0.31
CHMP1A-201ENST00000397901 SH3BGRL2Q9UJC5 107 aa13.1□□□□□ -0.31
CHMP1A-201ENST00000397901 TCF19Q9Y242 345 aa13.1□□□□□ -0.31
CHMP1A-201ENST00000397901 NPY1RP25929 384 aa13.1□□□□□ -0.31
CHMP1A-201ENST00000397901 CA7P43166 264 aa13.1□□□□□ -0.31
CHMP1A-201ENST00000397901 SLC35B1P78383 322 aa13.1□□□□□ -0.31
CHMP1A-201ENST00000397901 MRPL54Q6P161 138 aaKnown RBP13.1□□□□□ -0.31
CHMP1A-201ENST00000397901 Q6ZT83 130 aa13.1□□□□□ -0.31
CHMP1A-201ENST00000397901 STPG3Q8N7X2 389 aa13.1□□□□□ -0.31
CHMP1A-201ENST00000397901 S1PR3Q99500 378 aa13.1□□□□□ -0.31
CHMP1A-201ENST00000397901 LOC400499M0QZD8 3231 aa13.09□□□□□ -0.31
CHMP1A-201ENST00000397901 CECR9P0C854 216 aa13.09□□□□□ -0.31
CHMP1A-201ENST00000397901 EFNB3Q15768 340 aa13.09□□□□□ -0.31
CHMP1A-201ENST00000397901 FAM214BQ7L5A3 538 aa13.09□□□□□ -0.31
CHMP1A-201ENST00000397901 TMEM70Q9BUB7 260 aa13.09□□□□□ -0.31
CHMP1A-201ENST00000397901 OR4C46A6NHA9 309 aa13.08□□□□□ -0.31
CHMP1A-201ENST00000397901 ACTL6BO94805 426 aa13.08□□□□□ -0.31
CHMP1A-201ENST00000397901 MT-CO2P00403 227 aa13.08□□□□□ -0.31
CHMP1A-201ENST00000397901 GNG4P50150 75 aa13.08□□□□□ -0.31
CHMP1A-201ENST00000397901 C1orf229Q6ZS94 237 aaPredicted RBP13.08□□□□□ -0.31
CHMP1A-201ENST00000397901 OR2Z1Q8NG97 314 aa13.08□□□□□ -0.31
CHMP1A-201ENST00000397901 NPVFQ9HCQ7 196 aa13.08□□□□□ -0.31
CHMP1A-201ENST00000397901 LSM4Q9Y4Z0 139 aaKnown RBP13.08□□□□□ -0.31
CHMP1A-201ENST00000397901 GAGE10A6NGK3 116 aa13.08□□□□□ -0.32
CHMP1A-201ENST00000397901 FAM90A9PA6NNJ1 464 aa13.08□□□□□ -0.32
CHMP1A-201ENST00000397901 IGKV3-15P01624 115 aa13.08□□□□□ -0.32
CHMP1A-201ENST00000397901 MYOD1P15172 320 aa13.08□□□□□ -0.32
CHMP1A-201ENST00000397901 USF1P22415 310 aaPredicted RBP13.08□□□□□ -0.32
CHMP1A-201ENST00000397901 TMPRSS3P57727 454 aa13.08□□□□□ -0.32
CHMP1A-201ENST00000397901 NHLH1Q02575 133 aa13.08□□□□□ -0.32
CHMP1A-201ENST00000397901 OR1B1Q8NGR6 318 aa13.08□□□□□ -0.32
CHMP1A-201ENST00000397901 OR52E5Q8NH55 327 aa13.08□□□□□ -0.32
CHMP1A-201ENST00000397901 HINT2Q9BX68 163 aa13.08□□□□□ -0.32
CHMP1A-201ENST00000397901 COMMD5Q9GZQ3 224 aa13.08□□□□□ -0.32
CHMP1A-201ENST00000397901 TP73-AS1Q9UF72 201 aa13.08□□□□□ -0.32
CHMP1A-201ENST00000397901 IGKV1D-17A0A075B6S4 117 aa13.07□□□□□ -0.32
CHMP1A-201ENST00000397901 SMIM27A0A1W2PRY6 76 aa13.07□□□□□ -0.32
CHMP1A-201ENST00000397901 REG1BP48304 166 aa13.07□□□□□ -0.32
CHMP1A-201ENST00000397901 TCL1AP56279 114 aa13.07□□□□□ -0.32
CHMP1A-201ENST00000397901 KLF5Q13887 457 aaPredicted RBP13.07□□□□□ -0.32
CHMP1A-201ENST00000397901 TRAT1Q6PIZ9 186 aa13.07□□□□□ -0.32
CHMP1A-201ENST00000397901 SPATA12Q7Z6I5 190 aa13.07□□□□□ -0.32
CHMP1A-201ENST00000397901 FAM90A1Q86YD7 464 aa13.07□□□□□ -0.32
CHMP1A-201ENST00000397901 IFI27L2Q9H2X8 130 aa13.07□□□□□ -0.32
CHMP1A-201ENST00000397901 ZNF331Q9NQX6 463 aaPredicted RBP13.07□□□□□ -0.32
CHMP1A-201ENST00000397901 C1RLQ9NZP8 487 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms