RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 KRTDAPP60985 99 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 KLF5Q13887 457 aaPredicted RBP8.14□□□□□ -1.11
COL17A1-203ENST00000393211 PMCHL1Q16048 86 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 TDRG1Q3Y452 100 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 FAM162BQ5T6X4 162 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 ZNF788Q6ZQV5 615 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 ZNF833PQ6ZTB9 187 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 MBD6Q96DN6 1003 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 GRAMD2BQ96HH9 432 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 FAM167A-AS1Q96KT0 104 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 GAFA1Q96PS6 74 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 GCM1Q9NP62 436 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 NDUFA4L2Q9NRX3 87 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 TANC2Q9HCD6 1990 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 AHCTF1Q8WYP5 2266 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 DSCAML1Q8TD84 2053 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 APOA2P02652 100 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 FRMD6-AS1P0C7T7 363 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 CD33P20138 364 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 BTF3P20290 206 aaKnown RBP8.14□□□□□ -1.11
COL17A1-203ENST00000393211 USF1P22415 310 aaPredicted RBP8.14□□□□□ -1.11
COL17A1-203ENST00000393211 SRIP30626 198 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 ZNF83P51522 516 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 CCL11P51671 97 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 SUB1P53999 127 aaKnown RBP eCLIP8.14□□□□□ -1.11
COL17A1-203ENST00000393211 BPIFB3P59826 476 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 MEF2CQ06413 473 aaPredicted RBP8.14□□□□□ -1.11
COL17A1-203ENST00000393211 TMEM177Q53S58 311 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 TEX36Q5VZQ5 186 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 FAM71F2Q6NXP2 309 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 ATP5L2Q7Z4Y8 100 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 FDCSPQ8NFU4 85 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 VSTM2AQ8TAG5 236 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 LEAP2Q969E1 77 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 BORCS7Q96B45 105 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 SLC25A2Q9BXI2 301 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 LPAR2Q9HBW0 351 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 LINC00312Q9Y6C7 94 aa8.14□□□□□ -1.11
COL17A1-203ENST00000393211 DPRXA6NFQ7 191 aa8.13□□□□□ -1.11
COL17A1-203ENST00000393211 SRRM4A7MD48 611 aaKnown RBP8.13□□□□□ -1.11
COL17A1-203ENST00000393211 M0R1B8 84 aa8.13□□□□□ -1.11
COL17A1-203ENST00000393211 SPRY3O43610 288 aa8.13□□□□□ -1.11
COL17A1-203ENST00000393211 OR2J3O76001 311 aa8.13□□□□□ -1.11
COL17A1-203ENST00000393211 SAA1P0DJI8 122 aaPredicted RBP8.13□□□□□ -1.11
COL17A1-203ENST00000393211 MGST1P10620 155 aaKnown RBP8.13□□□□□ -1.11
COL17A1-203ENST00000393211 UBE2L3P68036 154 aaKnown RBP8.13□□□□□ -1.11
COL17A1-203ENST00000393211 TNFAIP6P98066 277 aaPredicted RBP8.13□□□□□ -1.11
COL17A1-203ENST00000393211 FXYD3Q14802 87 aa8.13□□□□□ -1.11
COL17A1-203ENST00000393211 SPATA45Q537H7 98 aa8.13□□□□□ -1.11
COL17A1-203ENST00000393211 CYB5R2Q6BCY4 276 aa8.13□□□□□ -1.11
COL17A1-203ENST00000393211 NIT1Q86X76 327 aa8.13□□□□□ -1.11
COL17A1-203ENST00000393211 STXBP6Q8NFX7 210 aa8.13□□□□□ -1.11
COL17A1-203ENST00000393211 TSKUQ8WUA8 353 aa8.13□□□□□ -1.11
COL17A1-203ENST00000393211 FAM103A1Q9BTL3 118 aaKnown RBP8.13□□□□□ -1.11
COL17A1-203ENST00000393211 GAL3ST2Q9H3Q3 398 aa8.13□□□□□ -1.11
COL17A1-203ENST00000393211 SERTAD4Q9NUC0 356 aa8.13□□□□□ -1.11
COL17A1-203ENST00000393211 AMMECR1Q9Y4X0 333 aaPredicted RBP8.13□□□□□ -1.11
COL17A1-203ENST00000393211 COX7A2P2O60397 106 aa8.12□□□□□ -1.11
COL17A1-203ENST00000393211 C3orf79P0CE67 100 aa8.12□□□□□ -1.11
COL17A1-203ENST00000393211 IGLC2P0DOY2 106 aa8.12□□□□□ -1.11
COL17A1-203ENST00000393211 IGLC3P0DOY3 106 aa8.12□□□□□ -1.11
COL17A1-203ENST00000393211 MYOD1P15172 320 aa8.12□□□□□ -1.11
COL17A1-203ENST00000393211 CASP6P55212 293 aa8.12□□□□□ -1.11
COL17A1-203ENST00000393211 RPL8P62917 257 aaKnown RBP8.12□□□□□ -1.11
COL17A1-203ENST00000393211 TBR1Q16650 682 aa8.12□□□□□ -1.11
COL17A1-203ENST00000393211 SPRNQ5BIV9 151 aa8.12□□□□□ -1.11
COL17A1-203ENST00000393211 UTF1Q5T230 341 aa8.12□□□□□ -1.11
COL17A1-203ENST00000393211 C8orf31Q8N9H6 132 aa8.12□□□□□ -1.11
COL17A1-203ENST00000393211 THAP8Q8NA92 274 aa8.12□□□□□ -1.11
COL17A1-203ENST00000393211 OR5AN1Q8NGI8 311 aa8.12□□□□□ -1.11
COL17A1-203ENST00000393211 OR9G1Q8NH87 305 aa8.12□□□□□ -1.11
COL17A1-203ENST00000393211 TMEM167AQ8TBQ9 72 aa8.12□□□□□ -1.11
COL17A1-203ENST00000393211 C18orf32Q8TCD1 76 aa8.12□□□□□ -1.11
COL17A1-203ENST00000393211 TMEM190Q8WZ59 177 aa8.12□□□□□ -1.11
COL17A1-203ENST00000393211 ZNF430Q9H8G1 570 aaPredicted RBP8.12□□□□□ -1.11
COL17A1-203ENST00000393211 ZFP30Q9Y2G7 519 aa8.12□□□□□ -1.11
COL17A1-203ENST00000393211 SOX21Q9Y651 276 aaPredicted RBP8.12□□□□□ -1.11
COL17A1-203ENST00000393211 TECTAO75443 2155 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 TCRBV4S1A1TA0A5B7 111 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 NKX6-3A6NJ46 265 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 PEX7O00628 323 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 NKX2-8O15522 239 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 IGHV1-46P01743 117 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 IGKV1-16P04430 117 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 HIST1H1EP10412 219 aaKnown RBP8.11□□□□□ -1.11
COL17A1-203ENST00000393211 PMCHP20382 165 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 GNG10P50151 68 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 C10orf113Q5VZT2 155 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 MRPL54Q6P161 138 aaKnown RBP8.11□□□□□ -1.11
COL17A1-203ENST00000393211 MOB3BQ86TA1 216 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 ZNF329Q86UD4 541 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 RCHY1Q96PM5 261 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 PAXXQ9BUH6 204 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 SAP30LQ9HAJ7 183 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 MRPS16Q9Y3D3 137 aaKnown RBP8.11□□□□□ -1.11
COL17A1-203ENST00000393211 FAM186AA6NE01 2351 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 MYO15AQ9UKN7 3530 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 H0YJW9 148 aa8.11□□□□□ -1.11
COL17A1-203ENST00000393211 GATA2P23769 480 aaPredicted RBP8.11□□□□□ -1.11
COL17A1-203ENST00000393211 MYCNOSP40205 109 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 111.2 ms