RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 ZNF785A8K8V0 405 aa11.88□□□□□ -0.51
RTF1-201ENST00000389629 M0QZ24 198 aa11.88□□□□□ -0.51
RTF1-201ENST00000389629 STPG4Q8N801 248 aa11.88□□□□□ -0.51
RTF1-201ENST00000389629 OSTCQ9NRP0 149 aa11.88□□□□□ -0.51
RTF1-201ENST00000389629 SPCS1Q9Y6A9 102 aa11.88□□□□□ -0.51
RTF1-201ENST00000389629 DOCK10Q96BY6 2186 aa11.88□□□□□ -0.51
RTF1-201ENST00000389629 APOHP02749 345 aaPredicted RBP11.88□□□□□ -0.51
RTF1-201ENST00000389629 COX7A1P24310 79 aa11.88□□□□□ -0.51
RTF1-201ENST00000389629 GNG5P63218 68 aa11.88□□□□□ -0.51
RTF1-201ENST00000389629 COX11Q9Y6N1 276 aa11.88□□□□□ -0.51
RTF1-201ENST00000389629 PEX7O00628 323 aa11.88□□□□□ -0.51
RTF1-201ENST00000389629 CKS2P33552 79 aa11.88□□□□□ -0.51
RTF1-201ENST00000389629 LRRC10Q5BKY1 277 aa11.88□□□□□ -0.51
RTF1-201ENST00000389629 RASL11BQ9BPW5 248 aa11.88□□□□□ -0.51
RTF1-201ENST00000389629 PILRBQ9UKJ0 227 aa11.88□□□□□ -0.51
RTF1-201ENST00000389629 NUP210Q8TEM1 1887 aaPredicted RBP11.88□□□□□ -0.51
RTF1-201ENST00000389629 PRB4P10163 310 aaPredicted RBP11.88□□□□□ -0.51
RTF1-201ENST00000389629 ACP7Q6ZNF0 438 aa11.88□□□□□ -0.51
RTF1-201ENST00000389629 FAM214BQ7L5A3 538 aa11.88□□□□□ -0.51
RTF1-201ENST00000389629 BHLHA15Q7RTS1 189 aaPredicted RBP11.88□□□□□ -0.51
RTF1-201ENST00000389629 C18orf15Q96N68 181 aa11.88□□□□□ -0.51
RTF1-201ENST00000389629 H3BVH4 76 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 PI4KAP42356 2102 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 GOLT1AQ6ZVE7 132 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 TRAV17A0A0B4J275 112 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 PEAR1Q5VY43 1037 aaPredicted RBP11.87□□□□□ -0.51
RTF1-201ENST00000389629 RNF7Q9UBF6 113 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 FAM181BA6NEQ2 426 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 DLL1O00548 723 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 PYYP10082 97 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 GFRA1P56159 465 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 Q6ZS49 121 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 SFXN3Q9BWM7 321 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 CLEC7AQ9BXN2 247 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 JPT1Q9UK76 154 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 NUPR1O60356 82 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 IGLV3-1P01715 115 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 TNFRSF1AP19438 455 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 ZNF585BQ52M93 769 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 LINC00305Q7Z4B0 112 aa11.87□□□□□ -0.51
RTF1-201ENST00000389629 A0A087X0K7 114 aa11.86□□□□□ -0.51
RTF1-201ENST00000389629 C21orf140B9A014 251 aa11.86□□□□□ -0.51
RTF1-201ENST00000389629 S100A4P26447 101 aaKnown RBP11.86□□□□□ -0.51
RTF1-201ENST00000389629 LHX2P50458 406 aa11.86□□□□□ -0.51
RTF1-201ENST00000389629 SRSF9Q13242 221 aaKnown RBP eCLIP11.86□□□□□ -0.51
RTF1-201ENST00000389629 TWIST1Q15672 202 aa11.86□□□□□ -0.51
RTF1-201ENST00000389629 HIGD1AQ9Y241 93 aa11.86□□□□□ -0.51
RTF1-201ENST00000389629 A0A1W2PS18 150 aa11.86□□□□□ -0.51
RTF1-201ENST00000389629 LGALS4P56470 323 aa11.86□□□□□ -0.51
RTF1-201ENST00000389629 SELENOTP62341 195 aa11.86□□□□□ -0.51
RTF1-201ENST00000389629 PCNX3Q9H6A9 2034 aa11.86□□□□□ -0.51
RTF1-201ENST00000389629 BPTFQ12830 3046 aa11.86□□□□□ -0.51
RTF1-201ENST00000389629 SSC4DQ8WTU2 575 aa11.86□□□□□ -0.51
RTF1-201ENST00000389629 IGLC2P0DOY2 106 aa11.86□□□□□ -0.51
RTF1-201ENST00000389629 IGLC3P0DOY3 106 aa11.86□□□□□ -0.51
RTF1-201ENST00000389629 CLDN18P56856 261 aa11.86□□□□□ -0.51
RTF1-201ENST00000389629 GAGE1Q13065 139 aa11.86□□□□□ -0.51
RTF1-201ENST00000389629 ZNF146Q15072 292 aa11.86□□□□□ -0.51
RTF1-201ENST00000389629 NCOA6Q14686 2063 aaPredicted RBP11.86□□□□□ -0.51
RTF1-201ENST00000389629 F2Z2F3 143 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 PSPNO60542 156 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 TYMSP04818 313 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 MAJINQ3KP22 176 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 MRPL52Q86TS9 123 aaKnown RBP11.85□□□□□ -0.51
RTF1-201ENST00000389629 NUDT10Q8NFP7 164 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 ITLN1Q8WWA0 313 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 SNRNP40Q96DI7 357 aaKnown RBP11.85□□□□□ -0.51
RTF1-201ENST00000389629 MGST2Q99735 147 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 CACNA1HO95180 2353 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 LOC107984156A0A0G2JMH3 177 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 SAMD13Q5VXD3 122 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 HAPLN4Q86UW8 402 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 ARL17AQ8IVW1 177 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 RPEQ96AT9 228 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 SLC25A17O43808 307 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 PNKDQ8N490 385 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 CDX2Q99626 313 aaPredicted RBP11.85□□□□□ -0.51
RTF1-201ENST00000389629 PKDREJQ9NTG1 2253 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 TRAV5A0A0B4J249 113 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 TMEM136Q6ZRR5 245 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 TSKUQ8WUA8 353 aa11.85□□□□□ -0.51
RTF1-201ENST00000389629 RALYQ9UKM9 306 aaKnown RBP11.85□□□□□ -0.51
RTF1-201ENST00000389629 IGKV1-39P01597 117 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 IGKV1D-39P04432 117 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 FAM201AQ5SY85 155 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 LHFPL4Q7Z7J7 247 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 C19orf24Q9BVV8 132 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 INTS1Q8N201 2190 aaKnown RBP11.84□□□□□ -0.51
RTF1-201ENST00000389629 NBEAP1P0C6P0 100 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 RPL7P18124 248 aaKnown RBP11.84□□□□□ -0.51
RTF1-201ENST00000389629 CD40P25942 277 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 NTF4P34130 210 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 CCL8P80075 99 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 EP300Q09472 2414 aaPredicted RBP11.84□□□□□ -0.51
RTF1-201ENST00000389629 PLCE1Q9P212 2302 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 NCBP2LA6PVI3 153 aaKnown RBP11.84□□□□□ -0.51
RTF1-201ENST00000389629 TDGF1P13385 188 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 ATP1A1-AS1Q5TC04 95 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 C1orf210Q8IVY1 113 aa11.84□□□□□ -0.51
RTF1-201ENST00000389629 OR9G1Q8NH87 305 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms