RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 PARP14Q460N5 1801 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 APELAP0DMC3 54 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 IGFBP2P18065 325 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 PGFP49763 221 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 PMS2CLQ68D20 193 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 BAALCQ8WXS3 180 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 AGMATQ9BSE5 352 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 IGKV6-21A0A0C4DH24 114 aa7.44□□□□□ -1.22
LIG3-202ENST00000378526 HLA-DMBP28068 263 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 GFI1BQ5VTD9 330 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 RNASE7Q9H1E1 156 aaKnown RBP7.43□□□□□ -1.22
LIG3-202ENST00000378526 C3AR1Q16581 482 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 SSC4DQ8WTU2 575 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 RASL10AQ92737 203 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 CD200R1LQ6Q8B3 271 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 EAF1Q96JC9 268 aaPredicted RBP7.43□□□□□ -1.22
LIG3-202ENST00000378526 A0A1W2PRD5 423 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 A0A1W2PRF3 423 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 A0A1W2PRM7 423 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 PRR32B1ATL7 298 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 H3BQ85 93 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 CXorf51AA0A1B0GTR3 108 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 NDUFA2O43678 99 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 CXCL5P42830 114 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 COL9A3Q14050 684 aaPredicted RBP7.43□□□□□ -1.22
LIG3-202ENST00000378526 ZAR1Q86SH2 424 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 GTSCR1Q86UQ5 136 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 UBE2E2Q96LR5 201 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 SNHG12Q9BXW3 62 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 MFRPQ9BY79 579 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 OR13A1Q8NGR1 328 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 TET1Q8NFU7 2136 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 PSME4Q14997 1843 aa7.43□□□□□ -1.22
LIG3-202ENST00000378526 NPIPB13A6NJU9 1138 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 FAM90A9PA6NNJ1 464 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 TEX45Q8NA69 505 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 Q9H3A6 140 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 TMEM202A6NGA9 273 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 UPK2O00526 184 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 ABHD12Q8N2K0 398 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 MYEOVQ96EZ4 313 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 IL6RP08887 468 aaPredicted RBP7.42□□□□□ -1.22
LIG3-202ENST00000378526 CCL1P22362 96 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 SPSB2Q99619 263 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 PDLIM7Q9NR12 457 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 THADAQ6YHU6 1953 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 TRAV1-1A0A0B4J248 108 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 TRBV5-5A0A0J9YX44 114 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 hDV102S1A0JD36 115 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 C9JCJ5 164 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 MPZP25189 248 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 PRSS12P56730 875 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 C1QL3Q5VWW1 255 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 AGRNO00468 2067 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 PKD1L3Q7Z443 1732 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 FAM240AA0A1B0GVK7 77 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 A0A1W2PQD3 144 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 CHKB-CPT1BH3BT56 60 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 ZG16O60844 167 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 COL9A2Q14055 689 aaPredicted RBP7.42□□□□□ -1.22
LIG3-202ENST00000378526 ETDBQ3ZM63 59 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 FOXA2Q9Y261 457 aaPredicted RBP7.42□□□□□ -1.22
LIG3-202ENST00000378526 CACNA1BQ00975 2339 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 SIVA1O15304 175 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 IQCF3P0C7M6 154 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 TAL2Q16559 108 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 SLC25A38Q96DW6 304 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 TCF19Q9Y242 345 aa7.42□□□□□ -1.22
LIG3-202ENST00000378526 IGHV3-21A0A0B4J1V1 117 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 A0A1W2PPV9 198 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 METTL12A8MUP2 240 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 FOXH1O75593 365 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 CDCP2Q5VXM1 449 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 C15orf53Q8NAA6 179 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 NAA38Q9BRA0 125 aaKnown RBP7.41□□□□□ -1.22
LIG3-202ENST00000378526 COL1A1P02452 1464 aaPredicted RBP7.41□□□□□ -1.22
LIG3-202ENST00000378526 TSC2P49815 1807 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 IGHV3-20A0A0C4DH32 117 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 TRBV5-4A0A0C4DH59 114 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 TM4SF1P30408 202 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 VSTM2LQ96N03 204 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 FZR1Q9UM11 496 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 EXPH5Q8NEV8 1989 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 ADARB2-AS1A8MUL3 147 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 TRA2AQ13595 282 aaKnown RBP eCLIP7.41□□□□□ -1.22
LIG3-202ENST00000378526 C1orf100Q5SVJ3 147 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 LINC01545Q5VT33 79 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 TEX43Q6ZNM6 134 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 TNFRSF12AQ9NP84 129 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 F6UB75 175 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 FGF16O43320 207 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 LYL1P12980 280 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 APOBEC3AP31941 199 aaPredicted RBP7.41□□□□□ -1.22
LIG3-202ENST00000378526 FGF11Q92914 225 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 TRPM7Q96QT4 1865 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 TBC1D29Q9UFV1 150 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 CEP290O15078 2479 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 GREB1Q4ZG55 1949 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 CRYBG1Q9Y4K1 1723 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 IGKV6D-21A0A0A0MT36 114 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms