RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 SYT8Q8NBV8 401 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 ZNF407Q9C0G0 2248 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 OR11H12B2RN74 326 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 TFF3Q07654 80 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 C5orf24Q7Z6I8 188 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 ZCCHC24Q8N2G6 241 aaKnown RBP12.57□□□□□ -0.4
NPHP4-201ENST00000378156 OR11H1Q8NG94 326 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 OR10J6PQ8NGY7 276 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 OR11H2Q8NH07 326 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 SSBP3Q9BWW4 388 aaPredicted RBP12.57□□□□□ -0.4
NPHP4-201ENST00000378156 C19orf67A6NJJ6 358 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 GPX4P36969 197 aaPredicted RBP12.57□□□□□ -0.4
NPHP4-201ENST00000378156 CCL20P78556 96 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 ZNF525Q8N782 197 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 C16orf92Q96LL3 132 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 NPCDR1Q9BY65 106 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 TBL2Q9Y4P3 447 aaKnown RBP12.57□□□□□ -0.4
NPHP4-201ENST00000378156 TIMP3P35625 211 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 EMP1P54849 157 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 CLDND2Q8NHS1 167 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 VCX2Q9H322 139 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 SDF2L1Q9HCN8 221 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 FRMPD3Q5JV73 1810 aa12.57□□□□□ -0.4
NPHP4-201ENST00000378156 IGHV3OR16-10A0A075B7F0 116 aa12.56□□□□□ -0.4
NPHP4-201ENST00000378156 TFF1P04155 84 aa12.56□□□□□ -0.4
NPHP4-201ENST00000378156 CIRBPQ14011 172 aaKnown RBP12.56□□□□□ -0.4
NPHP4-201ENST00000378156 PRDM13Q9H4Q3 707 aa12.56□□□□□ -0.4
NPHP4-201ENST00000378156 SOX21Q9Y651 276 aaPredicted RBP12.56□□□□□ -0.4
NPHP4-201ENST00000378156 HEATR1Q9H583 2144 aaKnown RBP12.56□□□□□ -0.4
NPHP4-201ENST00000378156 PRSS2P07478 247 aa12.56□□□□□ -0.4
NPHP4-201ENST00000378156 TTC9CQ8N5M4 171 aa12.56□□□□□ -0.4
NPHP4-201ENST00000378156 ZNF414Q96IQ9 312 aa12.56□□□□□ -0.4
NPHP4-201ENST00000378156 PLSCR4Q9NRQ2 329 aa12.56□□□□□ -0.4
NPHP4-201ENST00000378156 ANOS1P23352 680 aa12.56□□□□□ -0.4
NPHP4-201ENST00000378156 TFPI2P48307 235 aa12.56□□□□□ -0.4
NPHP4-201ENST00000378156 ID3Q02535 119 aa12.56□□□□□ -0.4
NPHP4-201ENST00000378156 PAPPA-AS1Q5QFB9 102 aa12.56□□□□□ -0.4
NPHP4-201ENST00000378156 PEAR1Q5VY43 1037 aaPredicted RBP12.56□□□□□ -0.4
NPHP4-201ENST00000378156 OR4D5Q8NGN0 318 aa12.56□□□□□ -0.4
NPHP4-201ENST00000378156 NEU1Q99519 415 aa12.56□□□□□ -0.4
NPHP4-201ENST00000378156 F11RQ9Y624 299 aaKnown RBP12.56□□□□□ -0.4
NPHP4-201ENST00000378156 ZFHX2Q9C0A1 2572 aaPredicted RBP12.56□□□□□ -0.4
NPHP4-201ENST00000378156 FBXL15Q9H469 300 aa12.56□□□□□ -0.4
NPHP4-201ENST00000378156 MDS2Q8NDY4 140 aa12.55□□□□□ -0.4
NPHP4-201ENST00000378156 CYB5R2Q6BCY4 276 aa12.55□□□□□ -0.4
NPHP4-201ENST00000378156 FAM53AQ6NSI3 398 aaPredicted RBP12.55□□□□□ -0.4
NPHP4-201ENST00000378156 C7orf71A4D174 169 aa12.55□□□□□ -0.4
NPHP4-201ENST00000378156 CCL3L1P16619 93 aa12.55□□□□□ -0.4
NPHP4-201ENST00000378156 RAB9AP51151 201 aa12.55□□□□□ -0.4
NPHP4-201ENST00000378156 C19orf54Q5BKX5 351 aa12.55□□□□□ -0.4
NPHP4-201ENST00000378156 DOCK7Q96N67 2140 aa12.55□□□□□ -0.4
NPHP4-201ENST00000378156 USF3Q68DE3 2245 aa12.55□□□□□ -0.4
NPHP4-201ENST00000378156 UBE2CO00762 179 aa12.55□□□□□ -0.4
NPHP4-201ENST00000378156 LRTM2Q8N967 370 aa12.55□□□□□ -0.4
NPHP4-201ENST00000378156 LAMTOR2Q9Y2Q5 125 aa12.55□□□□□ -0.4
NPHP4-201ENST00000378156 FAM106AQ4KMX7 169 aa12.54□□□□□ -0.4
NPHP4-201ENST00000378156 SAPCD1Q5SSQ6 148 aa12.54□□□□□ -0.4
NPHP4-201ENST00000378156 C14orf144Q96I85 54 aa12.54□□□□□ -0.4
NPHP4-201ENST00000378156 KCNS1Q96KK3 526 aa12.54□□□□□ -0.4
NPHP4-201ENST00000378156 YPEL1O60688 119 aa12.54□□□□□ -0.4
NPHP4-201ENST00000378156 ICAM4Q14773 271 aa12.54□□□□□ -0.4
NPHP4-201ENST00000378156 TM4SF20Q53R12 229 aa12.54□□□□□ -0.4
NPHP4-201ENST00000378156 ZNF497Q6ZNH5 498 aa12.54□□□□□ -0.4
NPHP4-201ENST00000378156 YPEL2Q96QA6 119 aa12.54□□□□□ -0.4
NPHP4-201ENST00000378156 MRPS16Q9Y3D3 137 aaKnown RBP12.54□□□□□ -0.4
NPHP4-201ENST00000378156 KIAA2026Q5HYC2 2103 aa12.54□□□□□ -0.4
NPHP4-201ENST00000378156 IGHV3-35A0A0C4DH35 117 aa12.53□□□□□ -0.4
NPHP4-201ENST00000378156 C1QTNF9BB2RNN3 333 aa12.53□□□□□ -0.4
NPHP4-201ENST00000378156 CD55P08174 381 aa12.53□□□□□ -0.4
NPHP4-201ENST00000378156 EBLN2Q6P2I7 272 aa12.53□□□□□ -0.4
NPHP4-201ENST00000378156 ALKBH7Q9BT30 221 aaPredicted RBP12.53□□□□□ -0.4
NPHP4-201ENST00000378156 ATP5G2Q06055 141 aa12.53□□□□□ -0.4
NPHP4-201ENST00000378156 LY6DQ14210 128 aa12.53□□□□□ -0.4
NPHP4-201ENST00000378156 TMEM170AQ8WVE7 144 aa12.53□□□□□ -0.4
NPHP4-201ENST00000378156 MRPL20Q9BYC9 149 aaKnown RBP12.53□□□□□ -0.4
NPHP4-201ENST00000378156 WNT10AQ9GZT5 417 aa12.53□□□□□ -0.4
NPHP4-201ENST00000378156 FER1L5A0AVI2 2057 aa12.53□□□□□ -0.4
NPHP4-201ENST00000378156 RRHO14718 337 aa12.53□□□□□ -0.4
NPHP4-201ENST00000378156 IL18BPO95998 194 aa12.53□□□□□ -0.4
NPHP4-201ENST00000378156 TBR1Q16650 682 aa12.53□□□□□ -0.4
NPHP4-201ENST00000378156 RAMP3O60896 148 aa12.53□□□□□ -0.4
NPHP4-201ENST00000378156 CD5P06127 495 aa12.53□□□□□ -0.4
NPHP4-201ENST00000378156 RELQ04864 619 aaPredicted RBP12.53□□□□□ -0.4
NPHP4-201ENST00000378156 FAM168AQ92567 244 aa12.53□□□□□ -0.4
NPHP4-201ENST00000378156 IFI27L2Q9H2X8 130 aa12.53□□□□□ -0.4
NPHP4-201ENST00000378156 PHLDA3Q9Y5J5 127 aa12.53□□□□□ -0.4
NPHP4-201ENST00000378156 CDKN1AP38936 164 aa12.52□□□□□ -0.4
NPHP4-201ENST00000378156 HIST1H1AQ02539 215 aaPredicted RBP12.52□□□□□ -0.4
NPHP4-201ENST00000378156 FAM169BQ8N8A8 192 aa12.52□□□□□ -0.4
NPHP4-201ENST00000378156 RFNGQ9Y644 331 aa12.52□□□□□ -0.4
NPHP4-201ENST00000378156 A0A1B0GW15 77 aa12.52□□□□□ -0.4
NPHP4-201ENST00000378156 ZNF324BQ6AW86 544 aaPredicted RBP12.52□□□□□ -0.4
NPHP4-201ENST00000378156 MOSP00540 346 aa12.52□□□□□ -0.41
NPHP4-201ENST00000378156 CX3CL1P78423 397 aa12.52□□□□□ -0.41
NPHP4-201ENST00000378156 ZNF124Q15973 351 aa12.52□□□□□ -0.41
NPHP4-201ENST00000378156 TCF23Q7RTU1 214 aa12.52□□□□□ -0.41
NPHP4-201ENST00000378156 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.52□□□□□ -0.417e-7■■■■□ 24.4
NPHP4-201ENST00000378156 A0A1B0GWB2 263 aa12.52□□□□□ -0.41
NPHP4-201ENST00000378156 CGB1A6NKQ9 187 aa12.52□□□□□ -0.41
NPHP4-201ENST00000378156 H3BTX0 84 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms