RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 OR4E1P0C645 316 aa10.2□□□□□ -0.78
VPS28-202ENST00000377348 RNASE2P10153 161 aaKnown RBP10.2□□□□□ -0.78
VPS28-202ENST00000377348 SNCAP37840 140 aa10.2□□□□□ -0.78
VPS28-202ENST00000377348 UBE2MP61081 183 aaKnown RBP10.2□□□□□ -0.78
VPS28-202ENST00000377348 IFITM3Q01628 133 aa10.2□□□□□ -0.78
VPS28-202ENST00000377348 DHRS2Q13268 280 aa10.2□□□□□ -0.78
VPS28-202ENST00000377348 SMCO1Q147U7 214 aa10.2□□□□□ -0.78
VPS28-202ENST00000377348 IL34Q6ZMJ4 242 aa10.2□□□□□ -0.78
VPS28-202ENST00000377348 UBAC2Q8NBM4 344 aa10.2□□□□□ -0.78
VPS28-202ENST00000377348 OR9G4Q8NGQ1 327 aa10.2□□□□□ -0.78
VPS28-202ENST00000377348 OR52E5Q8NH55 327 aa10.2□□□□□ -0.78
VPS28-202ENST00000377348 PINX1Q96BK5 328 aaKnown RBP10.2□□□□□ -0.78
VPS28-202ENST00000377348 OR4C12Q96R67 309 aa10.2□□□□□ -0.78
VPS28-202ENST00000377348 ELOVL1Q9BW60 279 aa10.2□□□□□ -0.78
VPS28-202ENST00000377348 C21orf62Q9NYP8 219 aa10.2□□□□□ -0.78
VPS28-202ENST00000377348 TRAV6A0A075B6T7 132 aa10.19□□□□□ -0.78
VPS28-202ENST00000377348 IGHV3-35A0A0C4DH35 117 aa10.19□□□□□ -0.78
VPS28-202ENST00000377348 DUXBA0A1W2PPF3 345 aa10.19□□□□□ -0.78
VPS28-202ENST00000377348 WI2-2373I1.2A0A1W2PRP0 233 aa10.19□□□□□ -0.78
VPS28-202ENST00000377348 I3L2K1 104 aa10.19□□□□□ -0.78
VPS28-202ENST00000377348 TGOLN2O43493 480 aa10.19□□□□□ -0.78
VPS28-202ENST00000377348 TCRBP04435 133 aa10.19□□□□□ -0.78
VPS28-202ENST00000377348 EDN2P20800 178 aa10.19□□□□□ -0.78
VPS28-202ENST00000377348 INSL3P51460 131 aa10.19□□□□□ -0.78
VPS28-202ENST00000377348 TATDN3Q17R31 274 aa10.19□□□□□ -0.78
VPS28-202ENST00000377348 C4orf46Q504U0 113 aa10.19□□□□□ -0.78
VPS28-202ENST00000377348 PDLIM3Q53GG5 364 aaPredicted RBP10.19□□□□□ -0.78
VPS28-202ENST00000377348 FAM209BQ5JX69 171 aa10.19□□□□□ -0.78
VPS28-202ENST00000377348 LYG2Q86SG7 212 aa10.19□□□□□ -0.78
VPS28-202ENST00000377348 OR52B4Q8NGK2 314 aa10.19□□□□□ -0.78
VPS28-202ENST00000377348 OR1S1Q8NH92 325 aa10.19□□□□□ -0.78
VPS28-202ENST00000377348 HEYLQ9NQ87 328 aaPredicted RBP10.19□□□□□ -0.78
VPS28-202ENST00000377348 A0A1B0GU03 582 aa10.18□□□□□ -0.78
VPS28-202ENST00000377348 K7EIL1 84 aa10.18□□□□□ -0.78
VPS28-202ENST00000377348 ADAP1O75689 374 aa10.18□□□□□ -0.78
VPS28-202ENST00000377348 CSN3P07498 182 aa10.18□□□□□ -0.78
VPS28-202ENST00000377348 TNFRSF9Q07011 255 aa10.18□□□□□ -0.78
VPS28-202ENST00000377348 ASAH1Q13510 395 aa10.18□□□□□ -0.78
VPS28-202ENST00000377348 Q56UQ5 140 aa10.18□□□□□ -0.78
VPS28-202ENST00000377348 GGNBP1Q5YKI7 109 aa10.18□□□□□ -0.78
VPS28-202ENST00000377348 PLET1Q6UQ28 207 aa10.18□□□□□ -0.78
VPS28-202ENST00000377348 MRAPQ8TCY5 172 aa10.18□□□□□ -0.78
VPS28-202ENST00000377348 PRR25Q96S07 402 aa10.18□□□□□ -0.78
VPS28-202ENST00000377348 CHRDL1Q9BU40 450 aa10.18□□□□□ -0.78
VPS28-202ENST00000377348 RBKSQ9H477 322 aa10.18□□□□□ -0.78
VPS28-202ENST00000377348 NUDT15Q9NV35 164 aa10.18□□□□□ -0.78
VPS28-202ENST00000377348 HSPB7Q9UBY9 170 aa10.18□□□□□ -0.78
VPS28-202ENST00000377348 TMED3Q9Y3Q3 217 aa10.18□□□□□ -0.78
VPS28-202ENST00000377348 FAM240BA0A1B0GVZ2 78 aa10.17□□□□□ -0.78
VPS28-202ENST00000377348 PITX3O75364 302 aa10.17□□□□□ -0.78
VPS28-202ENST00000377348 ADMP35318 185 aa10.17□□□□□ -0.78
VPS28-202ENST00000377348 MLANAQ16655 118 aa10.17□□□□□ -0.78
VPS28-202ENST00000377348 BSXQ3C1V8 233 aa10.17□□□□□ -0.78
VPS28-202ENST00000377348 PVRIGQ6DKI7 326 aa10.17□□□□□ -0.78
VPS28-202ENST00000377348 UNQ9165/PRO28630Q6UXU0 137 aa10.17□□□□□ -0.78
VPS28-202ENST00000377348 ADAMTSL5Q6ZMM2 481 aa10.17□□□□□ -0.78
VPS28-202ENST00000377348 REC114Q7Z4M0 266 aa10.17□□□□□ -0.78
VPS28-202ENST00000377348 GPHB5Q86YW7 130 aa10.17□□□□□ -0.78
VPS28-202ENST00000377348 COQ8AQ8NI60 647 aa10.17□□□□□ -0.78
VPS28-202ENST00000377348 TMEM170AQ8WVE7 144 aa10.17□□□□□ -0.78
VPS28-202ENST00000377348 TGP01266 2768 aa10.17□□□□□ -0.78
VPS28-202ENST00000377348 PIGBOS1A0A0B4J2F0 54 aa10.16□□□□□ -0.78
VPS28-202ENST00000377348 ZNF320A2RRD8 509 aa10.16□□□□□ -0.78
VPS28-202ENST00000377348 MPTX1A8MV57 137 aa10.16□□□□□ -0.78
VPS28-202ENST00000377348 H2AFB2P0C5Z0 115 aa10.16□□□□□ -0.78
VPS28-202ENST00000377348 SPNP16150 400 aa10.16□□□□□ -0.78
VPS28-202ENST00000377348 HTR2BP41595 481 aa10.16□□□□□ -0.78
VPS28-202ENST00000377348 SUB1P53999 127 aaKnown RBP eCLIP10.16□□□□□ -0.78
VPS28-202ENST00000377348 MZT2BQ6NZ67 158 aa10.16□□□□□ -0.78
VPS28-202ENST00000377348 SLC24A4Q8NFF2 622 aa10.16□□□□□ -0.78
VPS28-202ENST00000377348 DTD1Q8TEA8 209 aa10.16□□□□□ -0.78
VPS28-202ENST00000377348 CACNG8Q8WXS5 425 aa10.16□□□□□ -0.78
VPS28-202ENST00000377348 BSCL2Q96G97 398 aaPredicted RBP10.16□□□□□ -0.78
VPS28-202ENST00000377348 SEC22CQ9BRL7 303 aa10.16□□□□□ -0.78
VPS28-202ENST00000377348 FNDC4Q9H6D8 234 aaPredicted RBP10.16□□□□□ -0.78
VPS28-202ENST00000377348 PEMTQ9UBM1 199 aa10.16□□□□□ -0.78
VPS28-202ENST00000377348 ZNF256Q9Y2P7 627 aaPredicted RBP10.16□□□□□ -0.78
VPS28-202ENST00000377348 SELENOKQ9Y6D0 94 aa10.16□□□□□ -0.78
VPS28-202ENST00000377348 C2orf70A6NJV1 201 aa10.15□□□□□ -0.78
VPS28-202ENST00000377348 LGALS9O00182 355 aa10.15□□□□□ -0.78
VPS28-202ENST00000377348 LY86O95711 162 aa10.15□□□□□ -0.78
VPS28-202ENST00000377348 IGLV1-51P01701 117 aa10.15□□□□□ -0.78
VPS28-202ENST00000377348 CTSGP08311 255 aa10.15□□□□□ -0.78
VPS28-202ENST00000377348 IAPPP10997 89 aa10.15□□□□□ -0.78
VPS28-202ENST00000377348 SLC25A6P12236 298 aa10.15□□□□□ -0.78
VPS28-202ENST00000377348 OPRK1P41145 380 aa10.15□□□□□ -0.78
VPS28-202ENST00000377348 MFAP4P55083 255 aa10.15□□□□□ -0.78
VPS28-202ENST00000377348 FAM106AQ4KMX7 169 aa10.15□□□□□ -0.78
VPS28-202ENST00000377348 TM4SF20Q53R12 229 aa10.15□□□□□ -0.78
VPS28-202ENST00000377348 C2orf83Q53S99 150 aa10.15□□□□□ -0.78
VPS28-202ENST00000377348 ZNF414Q96IQ9 312 aa10.15□□□□□ -0.78
VPS28-202ENST00000377348 HIPK2Q9H2X6 1198 aa10.15□□□□□ -0.78
VPS28-202ENST00000377348 MRPL36Q9P0J6 103 aaKnown RBP10.15□□□□□ -0.78
VPS28-202ENST00000377348 ZMAT5Q9UDW3 170 aaKnown RBP10.15□□□□□ -0.78
VPS28-202ENST00000377348 IGHV3OR16-8A0A075B7F1 116 aa10.14□□□□□ -0.79
VPS28-202ENST00000377348 TMEM213A2RRL7 107 aa10.14□□□□□ -0.79
VPS28-202ENST00000377348 IZUMO1RA6ND01 250 aa10.14□□□□□ -0.79
VPS28-202ENST00000377348 FOLR2P14207 255 aa10.14□□□□□ -0.79
VPS28-202ENST00000377348 NPY1RP25929 384 aa10.14□□□□□ -0.79
VPS28-202ENST00000377348 FCGR2BP31994 310 aaPredicted RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms