RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 DSCR9P59020 149 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 SELENOTP62341 195 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 RPL23P62829 140 aaKnown RBP11.63□□□□□ -0.55
HMGA1-203ENST00000374116 OR2T10Q8NGZ9 312 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 PINX1Q96BK5 328 aaKnown RBP11.63□□□□□ -0.55
HMGA1-203ENST00000374116 TIMD4Q96H15 378 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 RPRMQ9NS64 109 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 FUT9Q9Y231 359 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 ABCA2Q9BZC7 2435 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 ZFP92A6NM28 416 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 K7EP13 123 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 NDUFS8O00217 210 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 EDDM3BP56851 147 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 RPL15P61313 204 aaKnown RBP11.63□□□□□ -0.55
HMGA1-203ENST00000374116 TMEM183BQ1AE95 376 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 TEX36Q5VZQ5 186 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 TAF15Q92804 592 aaKnown RBP eCLIP11.63□□□□□ -0.55
HMGA1-203ENST00000374116 TBX15Q96SF7 602 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 SMR3AQ99954 134 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 SMIM7Q9BQ49 75 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 CALYQ9NYX4 217 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 CLN8Q9UBY8 286 aa11.63□□□□□ -0.55
HMGA1-203ENST00000374116 RBFOX2O43251 390 aaKnown RBP eCLIP11.62□□□□□ -0.55
HMGA1-203ENST00000374116 USF1P22415 310 aaPredicted RBP11.62□□□□□ -0.55
HMGA1-203ENST00000374116 GNB2P62879 340 aa11.62□□□□□ -0.55
HMGA1-203ENST00000374116 ADIRFQ15847 76 aa11.62□□□□□ -0.55
HMGA1-203ENST00000374116 ZNF726P1Q15940 193 aa11.62□□□□□ -0.55
HMGA1-203ENST00000374116 TMEM41BQ5BJD5 291 aa11.62□□□□□ -0.55
HMGA1-203ENST00000374116 OR8G2PQ6IF36 304 aa11.62□□□□□ -0.55
HMGA1-203ENST00000374116 MS4A10Q96PG2 267 aa11.62□□□□□ -0.55
HMGA1-203ENST00000374116 PCGF1Q9BSM1 259 aa11.62□□□□□ -0.55
HMGA1-203ENST00000374116 TMEM147Q9BVK8 224 aa11.62□□□□□ -0.55
HMGA1-203ENST00000374116 GSX1Q9H4S2 264 aaPredicted RBP11.62□□□□□ -0.55
HMGA1-203ENST00000374116 HIVEP1P15822 2718 aa11.62□□□□□ -0.55
HMGA1-203ENST00000374116 UBE2L5PA0A1B0GUS4 154 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 PROP1O75360 226 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 RBMXL2O75526 392 aaKnown RBP11.61□□□□□ -0.55
HMGA1-203ENST00000374116 MMP23AO75900 390 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 VENTXO95231 258 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 CD99P14209 185 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 SLC25A16P16260 332 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 KIR2DS2P43631 304 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 RAB7AP51149 207 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 PAFAH1B2P68402 229 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 AARDQ4LEZ3 155 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 TPTE2P1Q5T6R2 138 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 KCNIP4Q6PIL6 250 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 ZNF788Q6ZQV5 615 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 OR10P1Q8NGE3 313 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 ORAOV1Q8WV07 137 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 TMEM37Q8WXS4 190 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 CCL13Q99616 98 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 FAM234AQ9H0X4 552 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 DNAJC4Q9NNZ3 241 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 CSPG4Q6UVK1 2322 aa11.61□□□□□ -0.55
HMGA1-203ENST00000374116 A0A1W2PN81 502 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 PMS2P5A8MQ11 134 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 CEBPZOSA8MTT3 80 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 M0R1X1 148 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 FCGR3BO75015 233 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 CHRNA7P36544 502 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 LINC00205P59089 165 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 C17orf58Q2M2W7 97 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 GAFA1Q96PS6 74 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 IFI27L2Q9H2X8 130 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 LINC00574Q9H8X3 128 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 TRGV10A0A0A0MS01 117 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 KBTBD11-OT1A0A1B0GTJ5 212 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 TMPRSS2O15393 492 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 FCN3O75636 299 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 ZNF134P52741 427 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 LMO4P61968 165 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 OR5I1Q13606 314 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 TMEM144Q7Z5S9 345 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 FAM216BQ8N7L0 139 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.6□□□□□ -0.55
HMGA1-203ENST00000374116 VSIRQ9H7M9 311 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 CTSZQ9UBR2 303 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 PXMP4Q9Y6I8 212 aa11.6□□□□□ -0.55
HMGA1-203ENST00000374116 DOCK11Q5JSL3 2073 aa11.59□□□□□ -0.55
HMGA1-203ENST00000374116 DSCAML1Q8TD84 2053 aa11.59□□□□□ -0.55
HMGA1-203ENST00000374116 TRAV38-1A0A0B4J264 116 aa11.59□□□□□ -0.55
HMGA1-203ENST00000374116 ZNF705FA8MVS1 300 aaPredicted RBP11.59□□□□□ -0.55
HMGA1-203ENST00000374116 TCF21O43680 179 aa11.59□□□□□ -0.55
HMGA1-203ENST00000374116 ZNF705DP0CH99 300 aaPredicted RBP11.59□□□□□ -0.55
HMGA1-203ENST00000374116 ZNF705BP0CI00 300 aaPredicted RBP11.59□□□□□ -0.55
HMGA1-203ENST00000374116 BPIFB3P59826 476 aa11.59□□□□□ -0.55
HMGA1-203ENST00000374116 ERVK-16P61578 105 aa11.59□□□□□ -0.55
HMGA1-203ENST00000374116 MEF2BQ02080 365 aaPredicted RBP11.59□□□□□ -0.55
HMGA1-203ENST00000374116 VWC2Q2TAL6 325 aa11.59□□□□□ -0.55
HMGA1-203ENST00000374116 TMEM30BQ3MIR4 351 aa11.59□□□□□ -0.55
HMGA1-203ENST00000374116 LEMD1Q68G75 181 aa11.59□□□□□ -0.55
HMGA1-203ENST00000374116 SSX7Q7RTT5 188 aa11.59□□□□□ -0.55
HMGA1-203ENST00000374116 TCF23Q7RTU1 214 aa11.59□□□□□ -0.55
HMGA1-203ENST00000374116 C11orf42Q8N5U0 333 aa11.59□□□□□ -0.55
HMGA1-203ENST00000374116 ZDHHC16Q969W1 377 aa11.59□□□□□ -0.55
HMGA1-203ENST00000374116 S1PR3Q99500 378 aa11.59□□□□□ -0.55
HMGA1-203ENST00000374116 QTRT1Q9BXR0 403 aaKnown RBP11.59□□□□□ -0.55
HMGA1-203ENST00000374116 ABCA1O95477 2261 aa11.59□□□□□ -0.55
HMGA1-203ENST00000374116 NKX6-3A6NJ46 265 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms