RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 ADH4P08319 380 aa11.25□□□□□ -0.61
USP49-201ENST00000373006 PRDX2P32119 198 aa11.25□□□□□ -0.61
USP49-201ENST00000373006 MLANAQ16655 118 aa11.25□□□□□ -0.61
USP49-201ENST00000373006 OCIAD2Q56VL3 154 aa11.25□□□□□ -0.61
USP49-201ENST00000373006 IL19Q9UHD0 177 aa11.25□□□□□ -0.61
USP49-201ENST00000373006 CDC42EP3Q9UKI2 254 aa11.25□□□□□ -0.61
USP49-201ENST00000373006 IGHV3OR15-7A0A075B7D8 119 aa11.25□□□□□ -0.61
USP49-201ENST00000373006 PRRX1P54821 245 aa11.25□□□□□ -0.61
USP49-201ENST00000373006 OR10J3Q5JRS4 329 aa11.25□□□□□ -0.61
USP49-201ENST00000373006 IBA57Q5T440 356 aaKnown RBP11.25□□□□□ -0.61
USP49-201ENST00000373006 WDR73Q6P4I2 378 aa11.25□□□□□ -0.61
USP49-201ENST00000373006 ZNRF1Q8ND25 227 aa11.25□□□□□ -0.61
USP49-201ENST00000373006 LRRC29Q8WV35 223 aa11.25□□□□□ -0.61
USP49-201ENST00000373006 NABP2Q9BQ15 211 aa11.25□□□□□ -0.61
USP49-201ENST00000373006 PLEKHA3Q9HB20 300 aa11.25□□□□□ -0.61
USP49-201ENST00000373006 LINC00869P0C866 280 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 AREGP15514 252 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 SLAQ13239 276 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 SMIM21Q3B7S5 101 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 FAM214BQ7L5A3 538 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 OR52E5Q8NH55 327 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 CXXC4Q9H2H0 198 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 GGTLC3B5MD39 225 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 C9orf172C9J069 976 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 MT-ND6P03923 174 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 PPOXP50336 477 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 RNFT1Q5M7Z0 435 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 ZNF503Q96F45 646 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 CLEC7AQ9BXN2 247 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 ABI3Q9P2A4 366 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 SPRR3Q9UBC9 169 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 LY96Q9Y6Y9 160 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 PTPRBP23467 1997 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 IGHV2OR16-5A0A0B4J2B6 119 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 TNFSF15O95150 251 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 APCSP02743 223 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 PRR20EP86478 221 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 PRR20CP86479 221 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 PRR20DP86480 221 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 PRR20BP86481 221 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 PRR20AP86496 221 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 PMCHL1Q16048 86 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 ENY2Q9NPA8 101 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 PCNX2A6NKB5 2137 aa11.24□□□□□ -0.61
USP49-201ENST00000373006 IGKV1OR2-108A0A075B7D4 117 aa11.23□□□□□ -0.61
USP49-201ENST00000373006 NUDT3O95989 172 aa11.23□□□□□ -0.61
USP49-201ENST00000373006 USF1P22415 310 aaPredicted RBP11.23□□□□□ -0.61
USP49-201ENST00000373006 PRR7Q8TB68 274 aa11.23□□□□□ -0.61
USP49-201ENST00000373006 TECRQ9NZ01 308 aaKnown RBP11.23□□□□□ -0.61
USP49-201ENST00000373006 ARFGEF3Q5TH69 2177 aa11.23□□□□□ -0.61
USP49-201ENST00000373006 AMY1AP04745 511 aa11.23□□□□□ -0.61
USP49-201ENST00000373006 STUMQ69YW2 141 aa11.23□□□□□ -0.61
USP49-201ENST00000373006 PMCHL2Q9BQD1 86 aa11.23□□□□□ -0.61
USP49-201ENST00000373006 IFI27L2Q9H2X8 130 aa11.23□□□□□ -0.61
USP49-201ENST00000373006 POLEQ07864 2286 aa11.23□□□□□ -0.61
USP49-201ENST00000373006 C15orf61A6NNL5 157 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 IGLV2-8P01709 118 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 GPR6P46095 362 aaPredicted RBP11.22□□□□□ -0.61
USP49-201ENST00000373006 CNEP1R1Q8N9A8 125 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 OSTCQ9NRP0 149 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 PLCE1Q9P212 2302 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 PCNX1Q96RV3 2341 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 FAM90A9PA6NNJ1 464 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 TNXAQ16473 311 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 FAM90A1Q86YD7 464 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 ZNF430Q9H8G1 570 aaPredicted RBP11.22□□□□□ -0.61
USP49-201ENST00000373006 SMG1Q96Q15 3661 aaKnown RBP11.22□□□□□ -0.61
USP49-201ENST00000373006 IGKV1D-17A0A075B6S4 117 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 SAA2-SAA4A0A096LPE2 208 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 TRAV5A0A0B4J249 113 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 UQCRFS1P47985 274 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 LOXL3P58215 753 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 HSPE1P61604 102 aaKnown RBP11.22□□□□□ -0.61
USP49-201ENST00000373006 HES3Q5TGS1 186 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 RNASEKQ6P5S7 137 aaKnown RBP11.22□□□□□ -0.61
USP49-201ENST00000373006 OR2Z1Q8NG97 314 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 SSBP4Q9BWG4 385 aaPredicted RBP11.22□□□□□ -0.61
USP49-201ENST00000373006 ZNF331Q9NQX6 463 aaPredicted RBP11.22□□□□□ -0.61
USP49-201ENST00000373006 ZNF355PQ9NSJ1 428 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 MGAQ8IWI9 3026 aa11.22□□□□□ -0.61
USP49-201ENST00000373006 ZFHX2Q9C0A1 2572 aaPredicted RBP11.21□□□□□ -0.61
USP49-201ENST00000373006 HLA-DQA1P01909 254 aa11.21□□□□□ -0.61
USP49-201ENST00000373006 KLHDC1Q8N7A1 406 aa11.21□□□□□ -0.61
USP49-201ENST00000373006 C18orf32Q8TCD1 76 aa11.21□□□□□ -0.61
USP49-201ENST00000373006 TMEM167BQ9NRX6 74 aa11.21□□□□□ -0.61
USP49-201ENST00000373006 TRGV5A0A0B4J1U4 118 aa11.21□□□□□ -0.62
USP49-201ENST00000373006 FBLL1A6NHQ2 334 aaKnown RBP11.21□□□□□ -0.62
USP49-201ENST00000373006 KLRC4-KLRK1H3BQV0 150 aa11.21□□□□□ -0.62
USP49-201ENST00000373006 ISLRO14498 428 aa11.21□□□□□ -0.62
USP49-201ENST00000373006 SELENOVP59797 346 aa11.21□□□□□ -0.62
USP49-201ENST00000373006 CSTL1Q9H114 145 aa11.21□□□□□ -0.62
USP49-201ENST00000373006 ARRDC1-AS1Q9H2J1 176 aa11.21□□□□□ -0.62
USP49-201ENST00000373006 SPENQ96T58 3664 aaKnown RBP11.21□□□□□ -0.62
USP49-201ENST00000373006 HSBP1O75506 76 aa11.2□□□□□ -0.62
USP49-201ENST00000373006 MFAP2P55001 183 aa11.2□□□□□ -0.62
USP49-201ENST00000373006 MORN5Q5VZ52 161 aa11.2□□□□□ -0.62
USP49-201ENST00000373006 CFAP161Q6P656 301 aa11.2□□□□□ -0.62
USP49-201ENST00000373006 C1orf210Q8IVY1 113 aa11.2□□□□□ -0.62
USP49-201ENST00000373006 OR4S2Q8NH73 311 aa11.2□□□□□ -0.62
USP49-201ENST00000373006 OR9G1Q8NH87 305 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms