RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 RAB29O14966 203 aa4.45□□□□□ -1.7
ATG4A-204ENST00000372246 ZNF207O43670 478 aaKnown RBP4.45□□□□□ -1.7
ATG4A-204ENST00000372246 NUDT3O95989 172 aa4.45□□□□□ -1.7
ATG4A-204ENST00000372246 PYYP10082 97 aa4.45□□□□□ -1.7
ATG4A-204ENST00000372246 USF1P22415 310 aaPredicted RBP4.45□□□□□ -1.7
ATG4A-204ENST00000372246 MC5RP33032 325 aa4.45□□□□□ -1.7
ATG4A-204ENST00000372246 GNG4P50150 75 aa4.45□□□□□ -1.7
ATG4A-204ENST00000372246 ZNF137PP52743 207 aa4.45□□□□□ -1.7
ATG4A-204ENST00000372246 C5orf64Q2M2E5 130 aa4.45□□□□□ -1.7
ATG4A-204ENST00000372246 VWC2Q2TAL6 325 aa4.45□□□□□ -1.7
ATG4A-204ENST00000372246 TMEM116Q8NCL8 245 aa4.45□□□□□ -1.7
ATG4A-204ENST00000372246 SMRP1Q8NCR6 262 aa4.45□□□□□ -1.7
ATG4A-204ENST00000372246 ZNF439Q8NDP4 499 aa4.45□□□□□ -1.7
ATG4A-204ENST00000372246 C18orf32Q8TCD1 76 aa4.45□□□□□ -1.7
ATG4A-204ENST00000372246 URB1-AS1Q96HZ7 61 aa4.45□□□□□ -1.7
ATG4A-204ENST00000372246 CDX2Q99626 313 aaPredicted RBP4.45□□□□□ -1.7
ATG4A-204ENST00000372246 PCED1AQ9H1Q7 454 aa4.45□□□□□ -1.7
ATG4A-204ENST00000372246 SH2D2AQ9NP31 389 aa4.45□□□□□ -1.7
ATG4A-204ENST00000372246 LRBAP50851 2863 aa4.45□□□□□ -1.7
ATG4A-204ENST00000372246 DCHS2Q6V1P9 2916 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 FAM90A10PA6NDY2 464 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 FAM90A18PA6NE21 464 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 FAM90A16PA6NEW6 464 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 HELTA6NFD8 242 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 FAM90A20PA6NIJ5 464 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 FAM90A8PA6NJQ4 464 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 FAM90A7PA6NKC0 464 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 FAM90A22PA8MWA6 464 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 FAM90A12PA8MX19 464 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 FAM90A5PA8MXJ8 464 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 FAM90A23PA8MXZ1 464 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 K7EMI3 77 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 M0R2Z0 102 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 LYZL6O75951 148 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 IGLV2-8P01709 118 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 FAM90A15PP0C7V4 464 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 FAM90A13PP0C7W8 464 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 FAM90A14PP0C7W9 464 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 FAM90A24PP0C7X0 464 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 APELAP0DMC3 54 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 UQCRFS1P47985 274 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 FABP6P51161 128 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 MFAP2P55001 183 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 EIF4EBP1Q13541 118 aaPredicted RBP4.44□□□□□ -1.7
ATG4A-204ENST00000372246 STUMQ69YW2 141 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 C19orf35Q6ZS72 473 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 SPACA3Q8IXA5 215 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 TMEM105Q8N8V8 129 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 OR9G1Q8NH87 305 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 OR2T6Q8NHC8 308 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 OBP2BQ9NPH6 170 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 CUBNO60494 3623 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 IGLC7A0M8Q6 106 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 PRSS46E5RG02 174 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 J3QT63 122 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 CXorf1O96002 111 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 APCSP02743 223 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 CSN3P07498 182 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 ESDP10768 282 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 CD99P14209 185 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 SRD5A2P31213 254 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 KLF3P57682 345 aaPredicted RBP4.44□□□□□ -1.7
ATG4A-204ENST00000372246 Q0VG73 95 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 SCGB2A2Q13296 93 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 LPAL2Q16609 132 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 Q5PR19 223 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 RUSC1-AS1Q66K80 236 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 OR4A47Q6IF82 309 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 TMEM108Q6UXF1 575 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 TEX45Q8NA69 505 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 ZNRF1Q8ND25 227 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 ZNF738Q8NE65 137 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 OR10W1Q8NGF6 305 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 SLC25A40Q8TBP6 338 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 NINJ1Q92982 152 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 BORCS7Q96B45 105 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 SNRNP40Q96DI7 357 aaKnown RBP4.44□□□□□ -1.7
ATG4A-204ENST00000372246 DEFB127Q9H1M4 99 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 MBNL3Q9NUK0 354 aaKnown RBP4.44□□□□□ -1.7
ATG4A-204ENST00000372246 ZFHX3Q15911 3703 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 NAV3Q8IVL0 2385 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 POLEQ07864 2286 aa4.44□□□□□ -1.7
ATG4A-204ENST00000372246 IGHV3-21A0A0B4J1V1 117 aa4.43□□□□□ -1.7
ATG4A-204ENST00000372246 TRAV8-6A0A0B4J262 113 aa4.43□□□□□ -1.7
ATG4A-204ENST00000372246 TAX1BP3O14907 124 aa4.43□□□□□ -1.7
ATG4A-204ENST00000372246 HSBP1O75506 76 aa4.43□□□□□ -1.7
ATG4A-204ENST00000372246 CFIP05156 583 aa4.43□□□□□ -1.7
ATG4A-204ENST00000372246 NPY1RP25929 384 aa4.43□□□□□ -1.7
ATG4A-204ENST00000372246 CX3CL1P78423 397 aa4.43□□□□□ -1.7
ATG4A-204ENST00000372246 PRB3Q04118 309 aaPredicted RBP4.43□□□□□ -1.7
ATG4A-204ENST00000372246 PSG3Q16557 428 aa4.43□□□□□ -1.7
ATG4A-204ENST00000372246 IBA57Q5T440 356 aaKnown RBP4.43□□□□□ -1.7
ATG4A-204ENST00000372246 LINC00322Q6ZN03 302 aaPredicted RBP4.43□□□□□ -1.7
ATG4A-204ENST00000372246 SSX8Q7RTT4 187 aa4.43□□□□□ -1.7
ATG4A-204ENST00000372246 S100A7AQ86SG5 101 aa4.43□□□□□ -1.7
ATG4A-204ENST00000372246 OR4A16Q8NH70 328 aa4.43□□□□□ -1.7
ATG4A-204ENST00000372246 ORAOV1Q8WV07 137 aa4.43□□□□□ -1.7
ATG4A-204ENST00000372246 CST9LQ9H4G1 147 aa4.43□□□□□ -1.7
ATG4A-204ENST00000372246 ZNF430Q9H8G1 570 aaPredicted RBP4.43□□□□□ -1.7
ATG4A-204ENST00000372246 BET1LQ9NYM9 111 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 130.7 ms