RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 SMCO1Q147U7 214 aa12.95□□□□□ -0.34
CLN3-203ENST00000357806 GPHB5Q86YW7 130 aa12.95□□□□□ -0.34
CLN3-203ENST00000357806 LRTM2Q8N967 370 aa12.95□□□□□ -0.34
CLN3-203ENST00000357806 ZNF256Q9Y2P7 627 aaPredicted RBP12.95□□□□□ -0.34
CLN3-203ENST00000357806 IGHV3-21A0A0B4J1V1 117 aa12.94□□□□□ -0.34
CLN3-203ENST00000357806 K7EIL1 84 aa12.94□□□□□ -0.34
CLN3-203ENST00000357806 CORTO00230 105 aa12.94□□□□□ -0.34
CLN3-203ENST00000357806 TGOLN2O43493 480 aa12.94□□□□□ -0.34
CLN3-203ENST00000357806 PLET1Q6UQ28 207 aa12.94□□□□□ -0.34
CLN3-203ENST00000357806 UBAC2Q8NBM4 344 aa12.94□□□□□ -0.34
CLN3-203ENST00000357806 BSCL2Q96G97 398 aaPredicted RBP12.94□□□□□ -0.34
CLN3-203ENST00000357806 WDR12Q9GZL7 423 aaKnown RBP12.94□□□□□ -0.34
CLN3-203ENST00000357806 ZC4H2Q9NQZ6 224 aa12.94□□□□□ -0.34
CLN3-203ENST00000357806 SIGLEC8Q9NYZ4 499 aa12.94□□□□□ -0.34
CLN3-203ENST00000357806 OR2T8A6NH00 312 aa12.93□□□□□ -0.34
CLN3-203ENST00000357806 LGALS9O00182 355 aa12.93□□□□□ -0.34
CLN3-203ENST00000357806 PLA2G10O15496 165 aa12.93□□□□□ -0.34
CLN3-203ENST00000357806 LY86O95711 162 aa12.93□□□□□ -0.34
CLN3-203ENST00000357806 IGLV1-51P01701 117 aa12.93□□□□□ -0.34
CLN3-203ENST00000357806 DCTN2Q13561 401 aaKnown RBP12.93□□□□□ -0.34
CLN3-203ENST00000357806 ANKRD55Q3KP44 614 aa12.93□□□□□ -0.34
CLN3-203ENST00000357806 FAM106AQ4KMX7 169 aa12.93□□□□□ -0.34
CLN3-203ENST00000357806 Q56UQ5 140 aa12.93□□□□□ -0.34
CLN3-203ENST00000357806 SPSB3Q6PJ21 355 aa12.93□□□□□ -0.34
CLN3-203ENST00000357806 PINX1Q96BK5 328 aaKnown RBP12.93□□□□□ -0.34
CLN3-203ENST00000357806 GAR1Q9NY12 217 aaKnown RBP12.93□□□□□ -0.34
CLN3-203ENST00000357806 FLVCR2Q9UPI3 526 aa12.93□□□□□ -0.34
CLN3-203ENST00000357806 CEBPZOSA8MTT3 80 aa12.92□□□□□ -0.34
CLN3-203ENST00000357806 I3L2K1 104 aa12.92□□□□□ -0.34
CLN3-203ENST00000357806 NXPH3O95157 252 aa12.92□□□□□ -0.34
CLN3-203ENST00000357806 MT-CO2P00403 227 aa12.92□□□□□ -0.34
CLN3-203ENST00000357806 CSN3P07498 182 aa12.92□□□□□ -0.34
CLN3-203ENST00000357806 RNASE2P10153 161 aaKnown RBP12.92□□□□□ -0.34
CLN3-203ENST00000357806 ZNF846Q147U1 533 aa12.92□□□□□ -0.34
CLN3-203ENST00000357806 IL34Q6ZMJ4 242 aa12.92□□□□□ -0.34
CLN3-203ENST00000357806 PRR25Q96S07 402 aa12.92□□□□□ -0.34
CLN3-203ENST00000357806 HEYLQ9NQ87 328 aaPredicted RBP12.92□□□□□ -0.34
CLN3-203ENST00000357806 TMED3Q9Y3Q3 217 aa12.92□□□□□ -0.34
CLN3-203ENST00000357806 A0A1B0GU03 582 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 C9orf170A2RU37 121 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 A8MWP6 167 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 OR4E1P0C645 316 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 SPNP16150 400 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 FCGR2BP31994 310 aaPredicted RBP12.91□□□□□ -0.34
CLN3-203ENST00000357806 HTR2BP41595 481 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 MFAP4P55083 255 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 BSXQ3C1V8 233 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 HAPLN4Q86UW8 402 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 OR1S1Q8NH92 325 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 C20orf85Q9H1P6 137 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 HSPB7Q9UBY9 170 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 ZNF320A2RRD8 509 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 F8W735 103 aaPredicted RBP12.91□□□□□ -0.34
CLN3-203ENST00000357806 SLC25A6P12236 298 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 TNFRSF9Q07011 255 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 DHRS2Q13268 280 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 C4orf46Q504U0 113 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 PVRIGQ6DKI7 326 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 SLC24A4Q8NFF2 622 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 COQ8AQ8NI60 647 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 TXN2Q99757 166 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 HIPK2Q9H2X6 1198 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 PALMDQ9NP74 551 aa12.91□□□□□ -0.34
CLN3-203ENST00000357806 C2orf70A6NJV1 201 aa12.9□□□□□ -0.34
CLN3-203ENST00000357806 GP9P14770 177 aa12.9□□□□□ -0.34
CLN3-203ENST00000357806 ANXA7P20073 488 aaKnown RBP12.9□□□□□ -0.34
CLN3-203ENST00000357806 OPRK1P41145 380 aa12.9□□□□□ -0.34
CLN3-203ENST00000357806 DEFB121Q5J5C9 76 aa12.9□□□□□ -0.34
CLN3-203ENST00000357806 LYG2Q86SG7 212 aa12.9□□□□□ -0.34
CLN3-203ENST00000357806 DYNLRB2Q8TF09 96 aa12.9□□□□□ -0.34
CLN3-203ENST00000357806 ZNF436Q9C0F3 470 aaPredicted RBP12.9□□□□□ -0.34
CLN3-203ENST00000357806 IGHV3-35A0A0C4DH35 117 aa12.89□□□□□ -0.35
CLN3-203ENST00000357806 NUPL2O15504 423 aaKnown RBP12.89□□□□□ -0.35
CLN3-203ENST00000357806 GNG7O60262 68 aa12.89□□□□□ -0.35
CLN3-203ENST00000357806 HOXB5P09067 269 aa12.89□□□□□ -0.35
CLN3-203ENST00000357806 LCN12Q6JVE5 192 aa12.89□□□□□ -0.35
CLN3-203ENST00000357806 OR2K2Q8NGT1 345 aa12.89□□□□□ -0.35
CLN3-203ENST00000357806 DTD1Q8TEA8 209 aa12.89□□□□□ -0.35
CLN3-203ENST00000357806 CHRDL1Q9BU40 450 aa12.89□□□□□ -0.35
CLN3-203ENST00000357806 TMEM213A2RRL7 107 aa12.88□□□□□ -0.35
CLN3-203ENST00000357806 NDUFA4O00483 81 aa12.88□□□□□ -0.35
CLN3-203ENST00000357806 PITX3O75364 302 aa12.88□□□□□ -0.35
CLN3-203ENST00000357806 UPK1BO75841 260 aa12.88□□□□□ -0.35
CLN3-203ENST00000357806 IGHV3-48P01763 117 aa12.88□□□□□ -0.35
CLN3-203ENST00000357806 TCRBP04435 133 aa12.88□□□□□ -0.35
CLN3-203ENST00000357806 FOLR2P14207 255 aa12.88□□□□□ -0.35
CLN3-203ENST00000357806 ADMP35318 185 aa12.88□□□□□ -0.35
CLN3-203ENST00000357806 RELQ04864 619 aaPredicted RBP12.88□□□□□ -0.35
CLN3-203ENST00000357806 C2orf83Q53S99 150 aa12.88□□□□□ -0.35
CLN3-203ENST00000357806 MZT2BQ6NZ67 158 aa12.88□□□□□ -0.35
CLN3-203ENST00000357806 UNQ9165/PRO28630Q6UXU0 137 aa12.88□□□□□ -0.35
CLN3-203ENST00000357806 NOXA1Q86UR1 476 aa12.88□□□□□ -0.35
CLN3-203ENST00000357806 DUSP18Q8NEJ0 188 aa12.88□□□□□ -0.35
CLN3-203ENST00000357806 TMEM190Q8WZ59 177 aa12.88□□□□□ -0.35
CLN3-203ENST00000357806 RBKSQ9H477 322 aa12.88□□□□□ -0.35
CLN3-203ENST00000357806 UFC1Q9Y3C8 167 aa12.88□□□□□ -0.35
CLN3-203ENST00000357806 FAM90A26D6RGX4 464 aa12.87□□□□□ -0.35
CLN3-203ENST00000357806 CTSGP08311 255 aa12.87□□□□□ -0.35
CLN3-203ENST00000357806 NPY1RP25929 384 aa12.87□□□□□ -0.35
CLN3-203ENST00000357806 NPBWR1P48145 328 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms