RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 TRGV3P03979 118 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 NUTF2P61970 127 aaKnown RBP9.84□□□□□ -0.83
COL9A1-202ENST00000357250 LYZL4Q96KX0 146 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 PRELID3AQ96N28 172 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 OSTCQ9NRP0 149 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 FBXL7Q9UJT9 491 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 LOC107984156A0A0G2JMH3 177 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 A1L4Q6 167 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 ASIPP42127 132 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 BSPH1Q075Z2 132 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 LHFPL1Q86WI0 220 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 ARL17AQ8IVW1 177 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 RNASE6Q93091 150 aaKnown RBP9.84□□□□□ -0.83
COL9A1-202ENST00000357250 EAF1Q96JC9 268 aaPredicted RBP9.84□□□□□ -0.83
COL9A1-202ENST00000357250 SLC50A1Q9BRV3 221 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 PLXNA3P51805 1871 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 ANAPC1Q9H1A4 1944 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 GRIFINA4D1Z8 144 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 PAX1P15863 534 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 PEAR1Q5VY43 1037 aaPredicted RBP9.84□□□□□ -0.83
COL9A1-202ENST00000357250 C9orf106Q8NAJ2 232 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 MRPL20Q9BYC9 149 aaKnown RBP9.84□□□□□ -0.83
COL9A1-202ENST00000357250 PCNX2A6NKB5 2137 aa9.84□□□□□ -0.83
COL9A1-202ENST00000357250 FOXI3A8MTJ6 420 aaPredicted RBP9.83□□□□□ -0.84
COL9A1-202ENST00000357250 HIST1H1AQ02539 215 aaPredicted RBP9.83□□□□□ -0.84
COL9A1-202ENST00000357250 MORN2Q502X0 79 aa9.83□□□□□ -0.84
COL9A1-202ENST00000357250 PPP1R27Q86WC6 154 aa9.83□□□□□ -0.84
COL9A1-202ENST00000357250 PEF1Q9UBV8 284 aaKnown RBP9.83□□□□□ -0.84
COL9A1-202ENST00000357250 USF3Q68DE3 2245 aa9.83□□□□□ -0.84
COL9A1-202ENST00000357250 WDR82Q6UXN9 313 aa9.83□□□□□ -0.84
COL9A1-202ENST00000357250 WDR83OSQ9Y284 106 aa9.83□□□□□ -0.84
COL9A1-202ENST00000357250 SHANK1Q9Y566 2161 aa9.83□□□□□ -0.84
COL9A1-202ENST00000357250 RPL23P62829 140 aaKnown RBP9.83□□□□□ -0.84
COL9A1-202ENST00000357250 DUX5Q96PT3 197 aa9.83□□□□□ -0.84
COL9A1-202ENST00000357250 IMMP2LQ96T52 175 aa9.83□□□□□ -0.84
COL9A1-202ENST00000357250 CCL19Q99731 98 aa9.83□□□□□ -0.84
COL9A1-202ENST00000357250 GEMIN7Q9H840 131 aaKnown RBP9.83□□□□□ -0.84
COL9A1-202ENST00000357250 TMEM242Q9NWH2 141 aa9.83□□□□□ -0.84
COL9A1-202ENST00000357250 CREBBPQ92793 2442 aa9.83□□□□□ -0.84
COL9A1-202ENST00000357250 SCO2A0A1W2PP80 73 aa9.83□□□□□ -0.84
COL9A1-202ENST00000357250 CGB1A6NKQ9 187 aa9.83□□□□□ -0.84
COL9A1-202ENST00000357250 PRR32B1ATL7 298 aa9.83□□□□□ -0.84
COL9A1-202ENST00000357250 SOD3P08294 240 aa9.83□□□□□ -0.84
COL9A1-202ENST00000357250 VOPP1Q96AW1 172 aa9.83□□□□□ -0.84
COL9A1-202ENST00000357250 TRAV1-1A0A0B4J248 108 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 TRAV24A0A0B4J272 114 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 C9orf172C9J069 976 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 EGR1P18146 543 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 PRCDQ00LT1 54 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 ZNF324BQ6AW86 544 aaPredicted RBP9.82□□□□□ -0.84
COL9A1-202ENST00000357250 LINC01560Q8TB33 94 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 TMEM170AQ8WVE7 144 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 ASCL2Q99929 193 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 IGKV1D-13A0A0B4J2D9 117 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 A0A1B0GW64 132 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 LDLRAD4O15165 306 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 NBR2O15453 112 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 IGKV1-13P0DP09 117 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 MST1P26927 711 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 ZNF56Q15929 161 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 PARD6GQ9BYG4 376 aaPredicted RBP9.82□□□□□ -0.84
COL9A1-202ENST00000357250 SEMA5BQ9P283 1151 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 NOTCH3Q9UM47 2321 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 IL18BPO95998 194 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 IGKV1D-33P01593 117 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 IGKV1-33P01594 117 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 SAA1P0DJI8 122 aaPredicted RBP9.82□□□□□ -0.84
COL9A1-202ENST00000357250 MTURNQ8N3F0 131 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 KCNS1Q96KK3 526 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 SGK494Q96LW2 274 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 ZNF257Q9Y2Q1 563 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 CEACAM4O75871 244 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 UQCRFS1P47985 274 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 PRSS8Q16651 343 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 CENPVQ7Z7K6 275 aaPredicted RBP9.82□□□□□ -0.84
COL9A1-202ENST00000357250 ORMDL3Q8N138 153 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 GFI1Q99684 422 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 TMEM133Q9H2Q1 129 aa9.82□□□□□ -0.84
COL9A1-202ENST00000357250 SPG11Q96JI7 2443 aa9.81□□□□□ -0.84
COL9A1-202ENST00000357250 SAA2-SAA4A0A096LPE2 208 aa9.81□□□□□ -0.84
COL9A1-202ENST00000357250 H0YIZ8 118 aa9.81□□□□□ -0.84
COL9A1-202ENST00000357250 SAA2P0DJI9 122 aaPredicted RBP9.81□□□□□ -0.84
COL9A1-202ENST00000357250 ATP5G3P48201 142 aa9.81□□□□□ -0.84
COL9A1-202ENST00000357250 CD69Q07108 199 aa9.81□□□□□ -0.84
COL9A1-202ENST00000357250 TTC9CQ8N5M4 171 aa9.81□□□□□ -0.84
COL9A1-202ENST00000357250 FOXA2Q9Y261 457 aaPredicted RBP9.81□□□□□ -0.84
COL9A1-202ENST00000357250 SCN8AQ9UQD0 1980 aa9.81□□□□□ -0.84
COL9A1-202ENST00000357250 LINC01549A6NIU2 74 aa9.81□□□□□ -0.84
COL9A1-202ENST00000357250 PRSS2P07478 247 aa9.81□□□□□ -0.84
COL9A1-202ENST00000357250 PRDM13Q9H4Q3 707 aa9.81□□□□□ -0.84
COL9A1-202ENST00000357250 TBL2Q9Y4P3 447 aaKnown RBP9.81□□□□□ -0.84
COL9A1-202ENST00000357250 FANCMQ8IYD8 2048 aa9.81□□□□□ -0.84
COL9A1-202ENST00000357250 C7orf71A4D174 169 aa9.81□□□□□ -0.84
COL9A1-202ENST00000357250 C19orf67A6NJJ6 358 aa9.81□□□□□ -0.84
COL9A1-202ENST00000357250 H3BTX0 84 aa9.81□□□□□ -0.84
COL9A1-202ENST00000357250 DUTP33316 252 aaKnown RBP9.81□□□□□ -0.84
COL9A1-202ENST00000357250 LEMD1Q68G75 181 aa9.81□□□□□ -0.84
COL9A1-202ENST00000357250 MIR17HGQ75NE6 70 aa9.81□□□□□ -0.84
COL9A1-202ENST00000357250 CBLN4Q9NTU7 201 aa9.81□□□□□ -0.84
COL9A1-202ENST00000357250 TCRBV4S1A1TA0A5B7 111 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms