RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 TMEM123Q8N131 208 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 LINC00482Q8N8I6 264 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 H0Y8G0 127 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 IGF1P05019 195 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 ENDOGQ14249 297 aaKnown RBP6.84□□□□□ -1.31
HMGB1-203ENST00000341423 PSG5Q15238 335 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 SPATA31B1PQ5VZV4 182 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 SELENOKQ9Y6D0 94 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 LOC102723971A0A1B0GUV8 181 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 H3BUA1 57 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 KRTAP10-9P60411 292 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 RPS20P60866 119 aaKnown RBP6.84□□□□□ -1.31
HMGB1-203ENST00000341423 AANATQ16613 207 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 TMEM97Q5BJF2 176 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 SAPCD1Q5SSQ6 148 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 PRNTQ86SH4 94 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 EIF4E3Q8N5X7 224 aaKnown RBP6.84□□□□□ -1.31
HMGB1-203ENST00000341423 GDPD1Q8N9F7 314 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 RNF138Q8WVD3 245 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 IL36RNQ9UBH0 155 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 GPR132Q9UNW8 380 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 COX11Q9Y6N1 276 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 SIPA1L3O60292 1781 aaPredicted RBP6.84□□□□□ -1.31
HMGB1-203ENST00000341423 TRDV1A0A1B0GX56 115 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 LRCOL1A6NCL2 159 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 FOXG1P55316 489 aaPredicted RBP6.84□□□□□ -1.31
HMGB1-203ENST00000341423 FXYD7P58549 80 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 RIGQ13278 110 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 PVRIGQ6DKI7 326 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 RIMKLAQ8IXN7 391 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 MAP1LC3CQ9BXW4 147 aa6.84□□□□□ -1.31
HMGB1-203ENST00000341423 ELOA3CA0A087WX78 387 aaPredicted RBP6.83□□□□□ -1.32
HMGB1-203ENST00000341423 ADARB2-AS1A8MUL3 147 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 GATCO43716 136 aaKnown RBP6.83□□□□□ -1.32
HMGB1-203ENST00000341423 P01737 135 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 TTRP02766 147 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 RPLP1P05386 114 aaKnown RBP6.83□□□□□ -1.32
HMGB1-203ENST00000341423 RNF224P0DH78 156 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 AQP4P55087 323 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 PAX9P55771 341 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 RAB32Q13637 225 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 PLAC9Q5JTB6 97 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 COPS9Q8WXC6 57 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 IGF2BP2-AS1Q96M15 143 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 C2orf88Q9BSF0 95 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 TOLLIPQ9H0E2 274 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 COL11A1P12107 1806 aaPredicted RBP6.83□□□□□ -1.32
HMGB1-203ENST00000341423 ATP6V0E1O15342 81 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 FCN3O75636 299 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 CD55P08174 381 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 H2AFB1P0C5Y9 115 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 CKS1BP61024 79 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 CIRBPQ14011 172 aaKnown RBP6.83□□□□□ -1.32
HMGB1-203ENST00000341423 KIAA0040Q15053 153 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 CTF1Q16619 201 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 ZNF841Q6ZN19 808 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 DNAJC4Q9NNZ3 241 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 YTHDF2Q9Y5A9 579 aaKnown RBP6.83□□□□□ -1.32
HMGB1-203ENST00000341423 GAGE12BA1L429 117 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 FAM229AH3BQW9 127 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 GAGE7O76087 117 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 GAGE12FP0CL80 117 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 GAGE12GP0CL81 117 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 GAGE12IP0CL82 117 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 COTL1Q14019 142 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 SP6Q3SY56 376 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 DLEU7Q6UYE1 221 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 PARP16Q8N5Y8 322 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 TSKUQ8WUA8 353 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 TICRRQ7Z2Z1 1910 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 SIP14410 1827 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 PEA15Q15121 130 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 ZNF586Q9NXT0 402 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 TUBGCP6Q96RT7 1819 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 ZNF705EA8MWA4 302 aaPredicted RBP6.83□□□□□ -1.32
HMGB1-203ENST00000341423 PFN1P07737 140 aaKnown RBP6.83□□□□□ -1.32
HMGB1-203ENST00000341423 CD28P10747 220 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 UBE2D1P51668 147 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 LHFPL4Q7Z7J7 247 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 OR8D4Q8NGM9 314 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 YIPF5Q969M3 257 aa6.83□□□□□ -1.32
HMGB1-203ENST00000341423 KIAA1671Q9BY89 1806 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 PTHLHP12272 177 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 OR2K2Q8NGT1 345 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 OR13C6PQ8NH95 151 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 SLC25A37Q9NYZ2 338 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 HSPB7Q9UBY9 170 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 HECTD1Q9ULT8 2610 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 DEFB131BA0A096LNP1 70 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 NPIPB8E9PQR5 432 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 NPIPB9F8W1W9 429 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 YPEL1O60688 119 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 NPIPB7O75200 414 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 DAPP51397 102 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 TMEM183BQ1AE95 376 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 TMEM183AQ8IXX5 376 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 CADM3Q8N126 398 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 YPEL2Q96QA6 119 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 NAA60Q9H7X0 242 aa6.82□□□□□ -1.32
HMGB1-203ENST00000341423 MARCH11A6NNE9 402 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 157.7 ms