RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 RAB40CQ96S21 281 aa17.21■□□□□ 0.35
SDC3-202ENST00000339394 ZNF436Q9C0F3 470 aaPredicted RBP17.21■□□□□ 0.35
SDC3-202ENST00000339394 ANK2Q01484 3957 aa17.21■□□□□ 0.34
SDC3-202ENST00000339394 SHISA2Q6UWI4 295 aa17.2■□□□□ 0.34
SDC3-202ENST00000339394 C18orf65Q6ZTR6 163 aa17.2■□□□□ 0.34
SDC3-202ENST00000339394 SMIM8Q96KF7 97 aa17.2■□□□□ 0.34
SDC3-202ENST00000339394 A0A1W2PRX2 142 aa17.19■□□□□ 0.34
SDC3-202ENST00000339394 H3BP45 60 aa17.19■□□□□ 0.34
SDC3-202ENST00000339394 IGHV3-11P01762 117 aa17.19■□□□□ 0.34
SDC3-202ENST00000339394 ATP5IP56385 69 aaPredicted RBP17.19■□□□□ 0.34
SDC3-202ENST00000339394 ATP5G2Q06055 141 aa17.19■□□□□ 0.34
SDC3-202ENST00000339394 SPANXN5Q5MJ07 72 aa17.19■□□□□ 0.34
SDC3-202ENST00000339394 MISP3Q96FF7 219 aa17.19■□□□□ 0.34
SDC3-202ENST00000339394 GNB4Q9HAV0 340 aa17.19■□□□□ 0.34
SDC3-202ENST00000339394 PSENENQ9NZ42 101 aa17.19■□□□□ 0.34
SDC3-202ENST00000339394 ADARB2-AS1A8MUL3 147 aa17.19■□□□□ 0.34
SDC3-202ENST00000339394 TAS2R30P59541 319 aa17.19■□□□□ 0.34
SDC3-202ENST00000339394 RPP30P78346 268 aaKnown RBP17.19■□□□□ 0.34
SDC3-202ENST00000339394 NDUFA11Q86Y39 141 aa17.19■□□□□ 0.34
SDC3-202ENST00000339394 PINX1Q96BK5 328 aaKnown RBP17.19■□□□□ 0.34
SDC3-202ENST00000339394 OR5B12Q96R08 314 aa17.19■□□□□ 0.34
SDC3-202ENST00000339394 IGHV3-21A0A0B4J1V1 117 aa17.18■□□□□ 0.34
SDC3-202ENST00000339394 C15orf62A8K5M9 175 aa17.18■□□□□ 0.34
SDC3-202ENST00000339394 K7EIM0 57 aa17.18■□□□□ 0.34
SDC3-202ENST00000339394 DEDDO75618 318 aa17.18■□□□□ 0.34
SDC3-202ENST00000339394 NSUN5P1Q3KNT7 163 aa17.18■□□□□ 0.34
SDC3-202ENST00000339394 NOXA1Q86UR1 476 aa17.18■□□□□ 0.34
SDC3-202ENST00000339394 CHAC2Q8WUX2 184 aa17.18■□□□□ 0.34
SDC3-202ENST00000339394 OR4C12Q96R67 309 aa17.18■□□□□ 0.34
SDC3-202ENST00000339394 C11orf1Q9H5F2 150 aa17.18■□□□□ 0.34
SDC3-202ENST00000339394 MFSD2BA6NFX1 497 aa17.17■□□□□ 0.34
SDC3-202ENST00000339394 H0YIZ8 118 aa17.17■□□□□ 0.34
SDC3-202ENST00000339394 I3L2K1 104 aa17.17■□□□□ 0.34
SDC3-202ENST00000339394 L7N2F9 121 aa17.17■□□□□ 0.34
SDC3-202ENST00000339394 CORTO00230 105 aa17.17■□□□□ 0.34
SDC3-202ENST00000339394 GIPP09681 153 aaPredicted RBP17.17■□□□□ 0.34
SDC3-202ENST00000339394 VAMP2P63027 116 aa17.17■□□□□ 0.34
SDC3-202ENST00000339394 KLHL30-AS1Q8NEE0 82 aa17.17■□□□□ 0.34
SDC3-202ENST00000339394 PAIP2BQ9ULR5 123 aaKnown RBP17.17■□□□□ 0.34
SDC3-202ENST00000339394 STRAPQ9Y3F4 350 aaKnown RBP17.17■□□□□ 0.34
SDC3-202ENST00000339394 S4R3C0 116 aa17.17■□□□□ 0.34
SDC3-202ENST00000339394 hCG_2014768A0A024R1R8 64 aa17.16■□□□□ 0.34
SDC3-202ENST00000339394 MPC2O95563 127 aa17.16■□□□□ 0.34
SDC3-202ENST00000339394 MT-CO2P00403 227 aa17.16■□□□□ 0.34
SDC3-202ENST00000339394 RLN2P04090 185 aa17.16■□□□□ 0.34
SDC3-202ENST00000339394 IFNA4P05014 189 aa17.16■□□□□ 0.34
SDC3-202ENST00000339394 PVALBP20472 110 aaPredicted RBP17.16■□□□□ 0.34
SDC3-202ENST00000339394 RNASEH2CQ8TDP1 164 aaKnown RBP17.16■□□□□ 0.34
SDC3-202ENST00000339394 SCARB1Q8WTV0 552 aa17.16■□□□□ 0.34
SDC3-202ENST00000339394 C4orf3Q8WVX3 66 aa17.16■□□□□ 0.34
SDC3-202ENST00000339394 ASB13Q8WXK3 278 aa17.16■□□□□ 0.34
SDC3-202ENST00000339394 CXorf58Q96LI9 332 aa17.16■□□□□ 0.34
SDC3-202ENST00000339394 A0A1B0GVG6 124 aa17.15■□□□□ 0.34
SDC3-202ENST00000339394 NUDT19A8MXV4 375 aa17.15■□□□□ 0.34
SDC3-202ENST00000339394 I3L521 148 aa17.15■□□□□ 0.34
SDC3-202ENST00000339394 TSC22D2O75157 780 aa17.15■□□□□ 0.34
SDC3-202ENST00000339394 IGHV3-23P01764 117 aa17.15■□□□□ 0.34
SDC3-202ENST00000339394 OPRK1P41145 380 aa17.15■□□□□ 0.34
SDC3-202ENST00000339394 RAB11AP62491 216 aa17.15■□□□□ 0.34
SDC3-202ENST00000339394 EXOSC2Q13868 293 aaKnown RBP17.15■□□□□ 0.34
SDC3-202ENST00000339394 ZNF343Q6P1L6 599 aa17.15■□□□□ 0.34
SDC3-202ENST00000339394 C8orf86Q6ZUL3 223 aa17.15■□□□□ 0.34
SDC3-202ENST00000339394 VN1R17PQ8TDU5 208 aa17.15■□□□□ 0.34
SDC3-202ENST00000339394 FNDC4Q9H6D8 234 aaPredicted RBP17.15■□□□□ 0.34
SDC3-202ENST00000339394 OR5AC2Q9NZP5 309 aa17.15■□□□□ 0.34
SDC3-202ENST00000339394 TRRAPQ9Y4A5 3859 aa17.15■□□□□ 0.34
SDC3-202ENST00000339394 IGHV3-48P01763 117 aa17.15■□□□□ 0.34
SDC3-202ENST00000339394 LGALS1P09382 135 aaKnown RBP17.15■□□□□ 0.34
SDC3-202ENST00000339394 OR8U8P0C7N1 319 aa17.15■□□□□ 0.34
SDC3-202ENST00000339394 MLANAQ16655 118 aa17.15■□□□□ 0.34
SDC3-202ENST00000339394 EEF1AKMT3Q96AZ1 226 aa17.15■□□□□ 0.34
SDC3-202ENST00000339394 RNF126Q9BV68 326 aa17.15■□□□□ 0.34
SDC3-202ENST00000339394 CAV2P51636 162 aa17.14■□□□□ 0.33
SDC3-202ENST00000339394 RAP2BP61225 183 aa17.14■□□□□ 0.33
SDC3-202ENST00000339394 TMEM14EPQ6UXP3 125 aa17.14■□□□□ 0.33
SDC3-202ENST00000339394 ETV3LQ6ZN32 361 aa17.14■□□□□ 0.33
SDC3-202ENST00000339394 TRBV7-1A0A0A6YYK4 115 aa17.13■□□□□ 0.33
SDC3-202ENST00000339394 PET100P0DJ07 73 aa17.13■□□□□ 0.33
SDC3-202ENST00000339394 BCAP31P51572 246 aa17.13■□□□□ 0.33
SDC3-202ENST00000339394 RUNX1Q01196 453 aa17.13■□□□□ 0.33
SDC3-202ENST00000339394 DEFB136Q30KP8 78 aa17.13■□□□□ 0.33
SDC3-202ENST00000339394 SPATA3Q8NHX4 192 aa17.13■□□□□ 0.33
SDC3-202ENST00000339394 ZNF502Q8TBZ5 544 aa17.13■□□□□ 0.33
SDC3-202ENST00000339394 CCDC140Q96MF4 163 aa17.13■□□□□ 0.33
SDC3-202ENST00000339394 LYRM2Q9NU23 88 aaPredicted RBP17.13■□□□□ 0.33
SDC3-202ENST00000339394 C21orf62Q9NYP8 219 aa17.13■□□□□ 0.33
SDC3-202ENST00000339394 TRAV14DV4A0A0A6YYC5 116 aa17.12■□□□□ 0.33
SDC3-202ENST00000339394 E5RGE8 158 aa17.12■□□□□ 0.33
SDC3-202ENST00000339394 METTL15P1P0C7V9 234 aa17.12■□□□□ 0.33
SDC3-202ENST00000339394 Q5BKY6 102 aa17.12■□□□□ 0.33
SDC3-202ENST00000339394 PRSS54Q6PEW0 395 aa17.12■□□□□ 0.33
SDC3-202ENST00000339394 DNHD1Q96M86 4753 aa17.12■□□□□ 0.33
SDC3-202ENST00000339394 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP17.11■□□□□ 0.33
SDC3-202ENST00000339394 ANKRD34BA5PLL1 514 aa17.11■□□□□ 0.33
SDC3-202ENST00000339394 FAM24AA6NFZ4 105 aa17.11■□□□□ 0.33
SDC3-202ENST00000339394 PMS2P5A8MQ11 134 aa17.11■□□□□ 0.33
SDC3-202ENST00000339394 TRBV12-3P01733 135 aa17.11■□□□□ 0.33
SDC3-202ENST00000339394 OR2T35Q8NGX2 323 aa17.11■□□□□ 0.33
SDC3-202ENST00000339394 MBD2Q9UBB5 411 aa17.11■□□□□ 0.33
SDC3-202ENST00000339394 RPS10-NUDT3A0A1W2PQS6 291 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms