RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 PRCDQ00LT1 54 aa8.65□□□□□ -1.02
CCDC88A-202ENST00000336838 GOLT1AQ6ZVE7 132 aa8.65□□□□□ -1.02
CCDC88A-202ENST00000336838 ABHD12Q8N2K0 398 aa8.65□□□□□ -1.02
CCDC88A-202ENST00000336838 TCRBV4S1A1TA0A5B7 111 aa8.65□□□□□ -1.02
CCDC88A-202ENST00000336838 NMSQ5H8A3 153 aa8.65□□□□□ -1.02
CCDC88A-202ENST00000336838 TEX38Q6PEX7 206 aa8.65□□□□□ -1.02
CCDC88A-202ENST00000336838 PCNX3Q9H6A9 2034 aa8.65□□□□□ -1.02
CCDC88A-202ENST00000336838 MED12LQ86YW9 2145 aa8.65□□□□□ -1.02
CCDC88A-202ENST00000336838 FAM90A27PA6NNH2 459 aa8.65□□□□□ -1.02
CCDC88A-202ENST00000336838 SUPT4H1P63272 117 aaKnown RBP8.65□□□□□ -1.02
CCDC88A-202ENST00000336838 QRFPP83859 136 aa8.65□□□□□ -1.02
CCDC88A-202ENST00000336838 A0A0G2JLM5 398 aa8.65□□□□□ -1.03
CCDC88A-202ENST00000336838 ATP5G2Q06055 141 aa8.65□□□□□ -1.03
CCDC88A-202ENST00000336838 TMEM42Q69YG0 159 aa8.65□□□□□ -1.03
CCDC88A-202ENST00000336838 MRPL14Q6P1L8 145 aaKnown RBP8.65□□□□□ -1.03
CCDC88A-202ENST00000336838 EAF1Q96JC9 268 aaPredicted RBP8.65□□□□□ -1.03
CCDC88A-202ENST00000336838 MRPL16Q9NX20 251 aaKnown RBP8.65□□□□□ -1.03
CCDC88A-202ENST00000336838 C1orf194Q5T5A4 169 aa8.65□□□□□ -1.03
CCDC88A-202ENST00000336838 H0YIZ8 118 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 IGKV1-9A0A0C4DH69 117 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 WBP1Q96G27 269 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 CYTL1Q9NRR1 136 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 JKAMPQ9P055 326 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 LOC107984156A0A0G2JMH3 177 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 MEX3AA1L020 520 aaKnown RBP8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 LINC00587B1AMM8 73 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 SERF1AO75920 110 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 CCL8P80075 99 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 ARL17AQ8IVW1 177 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 FCGR2BP31994 310 aaPredicted RBP8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 FXYD3Q14802 87 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 DEFB124Q8NES8 71 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 DYNLRB2Q8TF09 96 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 TGFBR3LH3BV60 316 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 NPPCP23582 126 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 TTC9CQ8N5M4 171 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 FGF11Q92914 225 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 TRAV39A0A0B4J263 110 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 PPIAL4CA0A0B4J2A2 164 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 SCO2A0A1W2PP80 73 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 FAM157AC9JC47 383 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 PPIAL4GP0DN37 164 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 SPEM2Q0P670 501 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 ORMDL2Q53FV1 153 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 PROB1E7EW31 1015 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 ITGB1BP1O14713 200 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 TFF3Q07654 80 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 MBNL2Q5VZF2 373 aaKnown RBP8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 CGAP01215 116 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 ASCL4Q6XD76 172 aa8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 SRSF8Q9BRL6 282 aaKnown RBP8.64□□□□□ -1.03
CCDC88A-202ENST00000336838 MED13Q9UHV7 2174 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 H3BRM9 83 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 OTX1P32242 354 aaPredicted RBP8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 TMEM14EPQ6UXP3 125 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 ORAOV1Q8WV07 137 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 RNF5Q99942 180 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 SPANXDQ9BXN6 97 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 GFRA4Q9GZZ7 299 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 IGHV2OR16-5A0A0B4J2B6 119 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 LHX2P50458 406 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 LTBP2Q14767 1821 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 TIMP4Q99727 224 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 ANAPC10Q9UM13 185 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 ARHGAP21Q5T5U3 1957 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 TMEM171Q8WVE6 324 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 HBDP02042 147 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 REG1BP48304 166 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 WDR83OSQ9Y284 106 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 FOXH1O75593 365 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 TMPRSS3P57727 454 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 C19orf54Q5BKX5 351 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 NPIPB3Q92617 1050 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 NEU1Q99519 415 aa8.63□□□□□ -1.03
CCDC88A-202ENST00000336838 IGHV1-69-2A0A0G2JMI3 117 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 UPK2O00526 184 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 HCP5Q6MZN7 132 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 ZNF826PQ6ZT77 177 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 SEMA5BQ9P283 1151 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 TRBV20OR9-2A0A075B6H5 130 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 C17orf98A8MV24 154 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 GPR183P32249 361 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 DUTP33316 252 aaKnown RBP8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 ASIPP42127 132 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 LOXL3P58215 753 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 ZNF841Q6ZN19 808 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 APOBEC3AP31941 199 aaPredicted RBP8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 HSD52Q0P140 79 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 CLEC2AQ6UVW9 174 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 LYPD1Q8N2G4 141 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 OR5AN1Q8NGI8 311 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 PIMREGQ9BSJ6 248 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 TRAV24A0A0B4J272 114 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 DNAL4O96015 105 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 TEX45Q8NA69 505 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 FSCN3Q9NQT6 498 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 CELA2AP08217 269 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 C1QTNF9P0C862 333 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 MORN2Q502X0 79 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms