RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 DMXL2Q8TDJ6 3036 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 TRAV8-6A0A0B4J262 113 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 OR4C46A6NHA9 309 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 CORTO00230 105 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 MPDU1O75352 247 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 REG1AP05451 166 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 FOXA3P55318 350 aaPredicted RBP11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 RHOGP84095 191 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 TBR1Q16650 682 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 RPL39P5Q59GN2 51 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 UTF1Q5T230 341 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 BVES-AS1Q5T3Y7 98 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 C12orf49Q9H741 205 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 NPVFQ9HCQ7 196 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 OSTCQ9NRP0 149 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 RP1L1Q8IWN7 2480 aaPredicted RBP11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 PTPRBP23467 1997 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 A0A087X0K7 114 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 SMIM27A0A1W2PRY6 76 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 GAGE12BA1L429 117 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 GNG7O60262 68 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 LINC00869P0C866 280 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 PLP2Q04941 152 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 MLANAQ16655 118 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 URB1-AS1Q96HZ7 61 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 TAAR6Q96RI8 345 aa11.07□□□□□ -0.64
CCDC88C-201ENST00000331194 LOC102723996A0A087X1L8 192 aa11.06□□□□□ -0.64
CCDC88C-201ENST00000331194 TMEM30CPA0ZSE6 113 aa11.06□□□□□ -0.64
CCDC88C-201ENST00000331194 CCL4P13236 92 aa11.06□□□□□ -0.64
CCDC88C-201ENST00000331194 PSG9Q00887 426 aa11.06□□□□□ -0.64
CCDC88C-201ENST00000331194 SPINK14Q6IE38 97 aa11.06□□□□□ -0.64
CCDC88C-201ENST00000331194 ZBTB34Q8NCN2 500 aa11.06□□□□□ -0.64
CCDC88C-201ENST00000331194 LAMTOR5O43504 91 aa11.06□□□□□ -0.64
CCDC88C-201ENST00000331194 TEPPQ6URK8 271 aa11.06□□□□□ -0.64
CCDC88C-201ENST00000331194 TMEM265A0A087WTH1 108 aa11.05□□□□□ -0.64
CCDC88C-201ENST00000331194 AREGP15514 252 aa11.05□□□□□ -0.64
CCDC88C-201ENST00000331194 ZNF146Q15072 292 aa11.05□□□□□ -0.64
CCDC88C-201ENST00000331194 LY96Q9Y6Y9 160 aa11.05□□□□□ -0.64
CCDC88C-201ENST00000331194 IZUMO1RA6ND01 250 aa11.05□□□□□ -0.64
CCDC88C-201ENST00000331194 VWC2LB2RUY7 222 aa11.05□□□□□ -0.64
CCDC88C-201ENST00000331194 C22orf46C9J442 243 aa11.05□□□□□ -0.64
CCDC88C-201ENST00000331194 Q0VFX4 171 aa11.05□□□□□ -0.64
CCDC88C-201ENST00000331194 EDDM3AQ14507 147 aa11.05□□□□□ -0.64
CCDC88C-201ENST00000331194 TRAT1Q6PIZ9 186 aa11.05□□□□□ -0.64
CCDC88C-201ENST00000331194 NUP35Q8NFH5 326 aa11.05□□□□□ -0.64
CCDC88C-201ENST00000331194 NAA38Q9BRA0 125 aaKnown RBP11.05□□□□□ -0.64
CCDC88C-201ENST00000331194 RTL8AQ9BWD3 113 aa11.05□□□□□ -0.64
CCDC88C-201ENST00000331194 PCNX2A6NKB5 2137 aa11.05□□□□□ -0.64
CCDC88C-201ENST00000331194 CEP250Q9BV73 2442 aa11.05□□□□□ -0.64
CCDC88C-201ENST00000331194 TRAV5A0A0B4J249 113 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 M0R296 226 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 ISLRO14498 428 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 WISP2O76076 250 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 CER1O95813 267 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 MT-CO2P00403 227 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 HES3Q5TGS1 186 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 MORN5Q5VZ52 161 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 VWA1Q6PCB0 445 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 HES7Q9BYE0 225 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 PLEKHA3Q9HB20 300 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 M0R1X1 148 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 ZNF138P52744 262 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 OR1C1Q15619 314 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 C1orf229Q6ZS94 237 aaPredicted RBP11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 LEAP2Q969E1 77 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 TCF19Q9Y242 345 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 OOEPA6NGQ2 149 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 DUTP33316 252 aaKnown RBP11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 MDP1Q86V88 176 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 NABP2Q9BQ15 211 aa11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 MRPL27Q9P0M9 148 aaKnown RBP11.04□□□□□ -0.64
CCDC88C-201ENST00000331194 ABCA1O95477 2261 aa11.03□□□□□ -0.64
CCDC88C-201ENST00000331194 IGKV1OR2-108A0A075B7D4 117 aa11.03□□□□□ -0.64
CCDC88C-201ENST00000331194 TMEM70Q9BUB7 260 aa11.03□□□□□ -0.64
CCDC88C-201ENST00000331194 LY6G6EA0A0G2JKS1 128 aa11.03□□□□□ -0.64
CCDC88C-201ENST00000331194 GPR12P47775 334 aa11.03□□□□□ -0.64
CCDC88C-201ENST00000331194 DEFB125Q8N687 156 aa11.03□□□□□ -0.64
CCDC88C-201ENST00000331194 IGF2BP2-AS1Q96M15 143 aa11.03□□□□□ -0.64
CCDC88C-201ENST00000331194 TMEM140Q9NV12 185 aa11.03□□□□□ -0.64
CCDC88C-201ENST00000331194 U3KQA8 63 aa11.03□□□□□ -0.64
CCDC88C-201ENST00000331194 ATMQ13315 3056 aa11.02□□□□□ -0.64
CCDC88C-201ENST00000331194 NDUFS8O00217 210 aa11.02□□□□□ -0.64
CCDC88C-201ENST00000331194 TCTAP57738 103 aa11.02□□□□□ -0.64
CCDC88C-201ENST00000331194 FAM120AOSQ5T036 256 aa11.02□□□□□ -0.64
CCDC88C-201ENST00000331194 SNRNP40Q96DI7 357 aaKnown RBP11.02□□□□□ -0.64
CCDC88C-201ENST00000331194 SP1P08047 785 aa11.02□□□□□ -0.65
CCDC88C-201ENST00000331194 PPOXP50336 477 aa11.02□□□□□ -0.65
CCDC88C-201ENST00000331194 TMPRSS3P57727 454 aa11.02□□□□□ -0.65
CCDC88C-201ENST00000331194 PRR20EP86478 221 aa11.02□□□□□ -0.65
CCDC88C-201ENST00000331194 PRR20CP86479 221 aa11.02□□□□□ -0.65
CCDC88C-201ENST00000331194 PRR20DP86480 221 aa11.02□□□□□ -0.65
CCDC88C-201ENST00000331194 PRR20BP86481 221 aa11.02□□□□□ -0.65
CCDC88C-201ENST00000331194 PRR20AP86496 221 aa11.02□□□□□ -0.65
CCDC88C-201ENST00000331194 TMEM105Q8N8V8 129 aa11.02□□□□□ -0.65
CCDC88C-201ENST00000331194 WDR54Q9H977 334 aa11.02□□□□□ -0.65
CCDC88C-201ENST00000331194 POLDIP2Q9Y2S7 368 aa11.02□□□□□ -0.65
CCDC88C-201ENST00000331194 MUC6Q6W4X9 2439 aa11.02□□□□□ -0.65
CCDC88C-201ENST00000331194 TOX4O94842 621 aa11.02□□□□□ -0.65
CCDC88C-201ENST00000331194 ZNF134P52741 427 aa11.02□□□□□ -0.65
CCDC88C-201ENST00000331194 SLC35E4Q6ICL7 350 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms