RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 SLC35E3Q7Z769 313 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 NPBQ8NG41 125 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 C10orf105Q8TEF2 133 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 KCNIP2Q9NS61 270 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 POLR3KQ9Y2Y1 108 aaPredicted RBP13.54□□□□□ -0.24
DDX41-201ENST00000330503 UTP20O75691 2785 aaKnown RBP13.53□□□□□ -0.24
DDX41-201ENST00000330503 VWC2LB2RUY7 222 aa13.53□□□□□ -0.24
DDX41-201ENST00000330503 TSPAN4O14817 238 aa13.53□□□□□ -0.24
DDX41-201ENST00000330503 IFNA1P01562 189 aa13.53□□□□□ -0.24
DDX41-201ENST00000330503 APELAP0DMC3 54 aa13.53□□□□□ -0.24
DDX41-201ENST00000330503 OR10J1P30954 320 aa13.53□□□□□ -0.24
DDX41-201ENST00000330503 ABHD5Q8WTS1 349 aa13.53□□□□□ -0.24
DDX41-201ENST00000330503 FAM168AQ92567 244 aa13.53□□□□□ -0.24
DDX41-201ENST00000330503 C20orf24Q9BUV8 137 aa13.53□□□□□ -0.24
DDX41-201ENST00000330503 WNK2Q9Y3S1 2297 aa13.53□□□□□ -0.24
DDX41-201ENST00000330503 IGHV4-61A0A0C4DH41 118 aa13.52□□□□□ -0.24
DDX41-201ENST00000330503 A0A1W2PPV4 95 aa13.52□□□□□ -0.24
DDX41-201ENST00000330503 OOSP1A8MZH6 123 aa13.52□□□□□ -0.24
DDX41-201ENST00000330503 SNRNP70P08621 437 aaKnown RBP13.52□□□□□ -0.24
DDX41-201ENST00000330503 UBE2E1P51965 193 aa13.52□□□□□ -0.24
DDX41-201ENST00000330503 CD81P60033 236 aa13.52□□□□□ -0.24
DDX41-201ENST00000330503 AKIRIN2Q53H80 203 aa13.52□□□□□ -0.24
DDX41-201ENST00000330503 AWAT1Q58HT5 328 aa13.52□□□□□ -0.24
DDX41-201ENST00000330503 FAM90A2PQ658T7 463 aa13.52□□□□□ -0.24
DDX41-201ENST00000330503 ZNF114Q8NC26 417 aa13.52□□□□□ -0.24
DDX41-201ENST00000330503 MRPL36Q9P0J6 103 aaKnown RBP13.52□□□□□ -0.24
DDX41-201ENST00000330503 PUS1Q9Y606 427 aaKnown RBP eCLIP13.52□□□□□ -0.24
DDX41-201ENST00000330503 EPG5Q9HCE0 2579 aa13.52□□□□□ -0.24
DDX41-201ENST00000330503 C7orf77A4D0Y5 90 aa13.52□□□□□ -0.25
DDX41-201ENST00000330503 NBR2O15453 112 aa13.52□□□□□ -0.25
DDX41-201ENST00000330503 NDUFA3O95167 84 aa13.52□□□□□ -0.25
DDX41-201ENST00000330503 GATA2P23769 480 aaPredicted RBP13.52□□□□□ -0.25
DDX41-201ENST00000330503 AKR1C3P42330 323 aa13.52□□□□□ -0.25
DDX41-201ENST00000330503 LGALS4P56470 323 aa13.52□□□□□ -0.25
DDX41-201ENST00000330503 MMDQ15546 238 aa13.52□□□□□ -0.25
DDX41-201ENST00000330503 SPATA31B1PQ5VZV4 182 aa13.52□□□□□ -0.25
DDX41-201ENST00000330503 ACY3Q96HD9 319 aa13.52□□□□□ -0.25
DDX41-201ENST00000330503 PIMREGQ9BSJ6 248 aa13.52□□□□□ -0.25
DDX41-201ENST00000330503 LPAR2Q9HBW0 351 aa13.52□□□□□ -0.25
DDX41-201ENST00000330503 H3BQ15 152 aa13.51□□□□□ -0.25
DDX41-201ENST00000330503 M0R036 132 aa13.51□□□□□ -0.25
DDX41-201ENST00000330503 IGHV3-48P01763 117 aa13.51□□□□□ -0.25
DDX41-201ENST00000330503 STAG3L2P0CL84 134 aa13.51□□□□□ -0.25
DDX41-201ENST00000330503 STAG3L3P0CL85 134 aa13.51□□□□□ -0.25
DDX41-201ENST00000330503 ATP5J2P56134 94 aa13.51□□□□□ -0.25
DDX41-201ENST00000330503 RUSC1-AS1Q66K80 236 aa13.51□□□□□ -0.25
DDX41-201ENST00000330503 CCDC144NLQ6NUI1 221 aa13.51□□□□□ -0.25
DDX41-201ENST00000330503 SRSF12Q8WXF0 261 aaKnown RBP13.51□□□□□ -0.25
DDX41-201ENST00000330503 SLC35E1Q96K37 410 aa13.51□□□□□ -0.25
DDX41-201ENST00000330503 SEPSECSQ9HD40 501 aaKnown RBP13.51□□□□□ -0.25
DDX41-201ENST00000330503 UBR5O95071 2799 aaPredicted RBP13.51□□□□□ -0.25
DDX41-201ENST00000330503 CRYGCP07315 174 aa13.51□□□□□ -0.25
DDX41-201ENST00000330503 PLGLAQ15195 96 aa13.51□□□□□ -0.25
DDX41-201ENST00000330503 MRPL41Q8IXM3 137 aaKnown RBP13.51□□□□□ -0.25
DDX41-201ENST00000330503 Q8N6K4 173 aa13.51□□□□□ -0.25
DDX41-201ENST00000330503 OR2T10Q8NGZ9 312 aa13.51□□□□□ -0.25
DDX41-201ENST00000330503 NRGNQ92686 78 aa13.51□□□□□ -0.25
DDX41-201ENST00000330503 DMRT1Q9Y5R6 373 aa13.51□□□□□ -0.25
DDX41-201ENST00000330503 PAGE4O60829 102 aa13.5□□□□□ -0.25
DDX41-201ENST00000330503 PSMB3P49720 205 aa13.5□□□□□ -0.25
DDX41-201ENST00000330503 MEF2BQ02080 365 aaPredicted RBP13.5□□□□□ -0.25
DDX41-201ENST00000330503 EBI3Q14213 229 aa13.5□□□□□ -0.25
DDX41-201ENST00000330503 IQCF2Q8IXL9 164 aa13.5□□□□□ -0.25
DDX41-201ENST00000330503 NPIPB3Q92617 1050 aa13.5□□□□□ -0.25
DDX41-201ENST00000330503 RPS10P5Q9NQ39 176 aa13.5□□□□□ -0.25
DDX41-201ENST00000330503 MANBALQ9NQG1 85 aa13.5□□□□□ -0.25
DDX41-201ENST00000330503 TBL2Q9Y4P3 447 aaKnown RBP13.5□□□□□ -0.25
DDX41-201ENST00000330503 IGKV1D-37A0A075B6S9 117 aa13.49□□□□□ -0.25
DDX41-201ENST00000330503 NDUFS8O00217 210 aa13.49□□□□□ -0.25
DDX41-201ENST00000330503 HES1Q14469 280 aa13.49□□□□□ -0.25
DDX41-201ENST00000330503 OR1P1Q8NH06 330 aa13.49□□□□□ -0.25
DDX41-201ENST00000330503 IGHV4-30-2A0A087WSY4 118 aa13.49□□□□□ -0.25
DDX41-201ENST00000330503 ARL14EPLP0DKL9 152 aa13.49□□□□□ -0.25
DDX41-201ENST00000330503 RHOBP62745 196 aa13.49□□□□□ -0.25
DDX41-201ENST00000330503 PAX8Q06710 450 aa13.49□□□□□ -0.25
DDX41-201ENST00000330503 C5orf64Q2M2E5 130 aa13.49□□□□□ -0.25
DDX41-201ENST00000330503 THAP8Q8NA92 274 aa13.49□□□□□ -0.25
DDX41-201ENST00000330503 MALSU1Q96EH3 234 aa13.49□□□□□ -0.25
DDX41-201ENST00000330503 F11RQ9Y624 299 aaKnown RBP13.49□□□□□ -0.25
DDX41-201ENST00000330503 ABCA2Q9BZC7 2435 aa13.48□□□□□ -0.25
DDX41-201ENST00000330503 TAGLN2P37802 199 aaKnown RBP13.48□□□□□ -0.25
DDX41-201ENST00000330503 CLEC2AQ6UVW9 174 aa13.48□□□□□ -0.25
DDX41-201ENST00000330503 CYP2G1PQ6ZSU1 146 aa13.48□□□□□ -0.25
DDX41-201ENST00000330503 MISP3Q96FF7 219 aa13.48□□□□□ -0.25
DDX41-201ENST00000330503 SLC25A33Q9BSK2 321 aa13.48□□□□□ -0.25
DDX41-201ENST00000330503 CNIH1O95406 144 aa13.48□□□□□ -0.25
DDX41-201ENST00000330503 CXorf1O96002 111 aa13.48□□□□□ -0.25
DDX41-201ENST00000330503 FAM120AOSQ5T036 256 aa13.48□□□□□ -0.25
DDX41-201ENST00000330503 SPNS3Q6ZMD2 512 aa13.48□□□□□ -0.25
DDX41-201ENST00000330503 MIR17HGQ75NE6 70 aa13.48□□□□□ -0.25
DDX41-201ENST00000330503 PERPQ96FX8 193 aa13.48□□□□□ -0.25
DDX41-201ENST00000330503 SMCO4Q9NRQ5 59 aa13.48□□□□□ -0.25
DDX41-201ENST00000330503 A1L4Q6 167 aa13.47□□□□□ -0.25
DDX41-201ENST00000330503 RHEBQ15382 184 aa13.47□□□□□ -0.25
DDX41-201ENST00000330503 TVP23CQ96ET8 276 aa13.47□□□□□ -0.25
DDX41-201ENST00000330503 SRSF8Q9BRL6 282 aaKnown RBP13.47□□□□□ -0.25
DDX41-201ENST00000330503 SPG11Q96JI7 2443 aa13.47□□□□□ -0.25
DDX41-201ENST00000330503 VPS13CQ709C8 3753 aa13.47□□□□□ -0.25
DDX41-201ENST00000330503 CENPVL3A0A0U1RRI6 287 aa13.46□□□□□ -0.25
DDX41-201ENST00000330503 PSMB11A5LHX3 300 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms