RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 E5RI56 91 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 TMEM250H0YL14 139 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 K7EPK0 472 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 MFNGO00587 321 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 DLEU1O43261 78 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 FADS1O60427 444 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 EDF1O60869 148 aaKnown RBP1.7□□□□□ -2.14
HMGB1-201ENST00000326004 ARL6IP5O75915 188 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 CXorf1O96002 111 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 IFNA10P01566 189 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 IFNGP01579 166 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 ISG15P05161 165 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 CTXN2P0C2S0 81 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 HSD11B1P28845 292 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 DDTP30046 118 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 SLC6A1P30531 599 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 AGTR1P30556 359 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 SERPINB10P48595 397 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 CEBPGP53567 150 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 MP68P56378 58 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 DEFA1P59665 94 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 DEFA3P59666 94 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 AP3S2P59780 193 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 RAB2AP61019 212 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 TFAMQ00059 246 aaKnown RBP1.7□□□□□ -2.14
HMGB1-201ENST00000326004 PPP1R1AQ13522 171 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 KRR1Q13601 381 aaKnown RBP1.7□□□□□ -2.14
HMGB1-201ENST00000326004 C1DQ13901 141 aaKnown RBP1.7□□□□□ -2.14
HMGB1-201ENST00000326004 SPA17Q15506 151 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 OR8G1Q15617 311 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 ZNF181Q2M3W8 571 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 ACSM3Q53FZ2 586 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 CENPWQ5EE01 88 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 CLLU1Q5K131 121 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 FAM74A1Q5RGS3 127 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 HACD4Q5VWC8 232 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 SPATA31B1PQ5VZV4 182 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 TMEM215Q68D42 235 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 CSPG4Q6UVK1 2322 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 RASSF6Q6ZTQ3 369 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 LINC00304Q8N9R0 145 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 OR1P1Q8NH06 330 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 ZNRF2Q8NHG8 242 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 C16orf78Q8WTQ4 265 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 SLC7A6Q92536 515 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 RAB8BQ92930 207 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 HOPXQ9BPY8 73 aaPredicted RBP1.7□□□□□ -2.14
HMGB1-201ENST00000326004 CMSS1Q9BQ75 279 aaKnown RBP1.7□□□□□ -2.14
HMGB1-201ENST00000326004 TCEAL7Q9BRU2 100 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 TMEM109Q9BVC6 243 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 GGACTQ9BVM4 153 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 C1QTNF6Q9BXI9 259 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 CCDC90BQ9GZT6 254 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 PCBD2Q9H0N5 130 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 PRO1933Q9H354 126 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 TRABDQ9H4I3 376 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 VSIRQ9H7M9 311 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 FBXL12Q9NXK8 326 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 DKKL1Q9UK85 242 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 SCN10AQ9Y5Y9 1956 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 PKD1L1Q8TDX9 2849 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 NBASA2RRP1 2371 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 ASCC3Q8N3C0 2202 aaKnown RBP1.7□□□□□ -2.14
HMGB1-201ENST00000326004 MED13Q9UHV7 2174 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 PCNX2A6NKB5 2137 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP1.69□□□□□ -2.14
HMGB1-201ENST00000326004 A0A0G2JND7 137 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 M0QZK8 103 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 ISLRO14498 428 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 PDCD5O14737 125 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 CHP2O43745 196 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 IGF2P01344 180 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 IFNA7P01567 189 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 C1QBP02746 253 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 IGLV7-43P04211 117 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 TRAPPC2P0DI81 140 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 TRAPPC2BP0DI82 140 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 GTF2F2P13984 249 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 GABRA1P14867 456 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 RPS3P23396 243 aaKnown RBP eCLIP1.69□□□□□ -2.149e-18■■□□□ 12.1
HMGB1-201ENST00000326004 RPL12P30050 165 aaKnown RBP1.69□□□□□ -2.14
HMGB1-201ENST00000326004 CD200P41217 278 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 MAXP61244 160 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 PKIAP61925 76 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 DEFA5Q01523 94 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 FMODQ06828 376 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 TSPAN31Q12999 210 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 IL15RAQ13261 267 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 BIKQ13323 160 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 TAF1AQ15573 450 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-201ENST00000326004 NCMAPQ5T1S8 102 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 HES3Q5TGS1 186 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 HAGHLQ6PII5 290 aaPredicted RBP1.69□□□□□ -2.14
HMGB1-201ENST00000326004 WDR59Q6PJI9 974 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 TEX261Q6UWH6 196 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 CYHR1Q6ZMK1 362 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 VN1R4Q7Z5H5 301 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 TCTE3Q8IZS6 198 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 STX19Q8N4C7 294 aa1.69□□□□□ -2.14
HMGB1-201ENST00000326004 YIPF7Q8N8F6 280 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms