RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 FAM90A27PA6NNH2 459 aa12.23□□□□□ -0.45
TCOF1-201ENST00000323668 MGST2Q99735 147 aa12.23□□□□□ -0.45
TCOF1-201ENST00000323668 SEPSECSQ9HD40 501 aaKnown RBP12.23□□□□□ -0.45
TCOF1-201ENST00000323668 ELOVL5Q9NYP7 299 aa12.23□□□□□ -0.45
TCOF1-201ENST00000323668 CRIM1Q9NZV1 1036 aa12.23□□□□□ -0.45
TCOF1-201ENST00000323668 MOSP00540 346 aa12.22□□□□□ -0.45
TCOF1-201ENST00000323668 FOXA3P55318 350 aaPredicted RBP12.22□□□□□ -0.45
TCOF1-201ENST00000323668 OR8A1Q8NGG7 326 aa12.22□□□□□ -0.45
TCOF1-201ENST00000323668 C2orf16Q68DN1 1984 aa12.22□□□□□ -0.45
TCOF1-201ENST00000323668 SAA1P0DJI8 122 aaPredicted RBP12.22□□□□□ -0.45
TCOF1-201ENST00000323668 COMPP49747 757 aaPredicted RBP12.22□□□□□ -0.45
TCOF1-201ENST00000323668 HBBP68871 147 aa12.22□□□□□ -0.45
TCOF1-201ENST00000323668 RELBQ01201 579 aa12.22□□□□□ -0.45
TCOF1-201ENST00000323668 GNB1LQ9BYB4 327 aa12.22□□□□□ -0.45
TCOF1-201ENST00000323668 PEAR1Q5VY43 1037 aaPredicted RBP12.22□□□□□ -0.45
TCOF1-201ENST00000323668 SNRNP40Q96DI7 357 aaKnown RBP12.22□□□□□ -0.45
TCOF1-201ENST00000323668 RAB1BQ9H0U4 201 aa12.22□□□□□ -0.45
TCOF1-201ENST00000323668 IGHV1-18A0A0C4DH31 117 aa12.22□□□□□ -0.45
TCOF1-201ENST00000323668 IZUMO1RA6ND01 250 aa12.22□□□□□ -0.45
TCOF1-201ENST00000323668 BTF3P20290 206 aaKnown RBP12.22□□□□□ -0.45
TCOF1-201ENST00000323668 FAM27E3Q08E93 113 aa12.22□□□□□ -0.45
TCOF1-201ENST00000323668 KCNS1Q96KK3 526 aa12.22□□□□□ -0.45
TCOF1-201ENST00000323668 MRPL20Q9BYC9 149 aaKnown RBP12.22□□□□□ -0.45
TCOF1-201ENST00000323668 PRSS1P07477 247 aa12.21□□□□□ -0.45
TCOF1-201ENST00000323668 PRCDQ00LT1 54 aa12.21□□□□□ -0.45
TCOF1-201ENST00000323668 C1orf194Q5T5A4 169 aa12.21□□□□□ -0.45
TCOF1-201ENST00000323668 CD177Q8N6Q3 437 aa12.21□□□□□ -0.45
TCOF1-201ENST00000323668 GFRA3O60609 400 aa12.21□□□□□ -0.45
TCOF1-201ENST00000323668 TRAV3A0A0B4J244 114 aa12.21□□□□□ -0.46
TCOF1-201ENST00000323668 MLNRO43193 412 aa12.21□□□□□ -0.46
TCOF1-201ENST00000323668 ORM1P02763 201 aa12.21□□□□□ -0.46
TCOF1-201ENST00000323668 CD69Q07108 199 aa12.21□□□□□ -0.46
TCOF1-201ENST00000323668 SPATA31B1PQ5VZV4 182 aa12.21□□□□□ -0.46
TCOF1-201ENST00000323668 C12orf54Q6X4T0 127 aa12.21□□□□□ -0.46
TCOF1-201ENST00000323668 MDS2Q8NDY4 140 aa12.21□□□□□ -0.46
TCOF1-201ENST00000323668 LINC00312Q9Y6C7 94 aa12.21□□□□□ -0.46
TCOF1-201ENST00000323668 DNAH12Q6ZR08 3092 aa12.21□□□□□ -0.46
TCOF1-201ENST00000323668 ZNF503-AS2A6NEH8 195 aa12.21□□□□□ -0.46
TCOF1-201ENST00000323668 IGKV1D-33P01593 117 aa12.21□□□□□ -0.46
TCOF1-201ENST00000323668 IGKV1-33P01594 117 aa12.21□□□□□ -0.46
TCOF1-201ENST00000323668 S100A4P26447 101 aaKnown RBP12.21□□□□□ -0.46
TCOF1-201ENST00000323668 CYB5R2Q6BCY4 276 aa12.21□□□□□ -0.46
TCOF1-201ENST00000323668 SLC25A34Q6PIV7 304 aa12.21□□□□□ -0.46
TCOF1-201ENST00000323668 RNASEH2CQ8TDP1 164 aaKnown RBP12.21□□□□□ -0.46
TCOF1-201ENST00000323668 CD40P25942 277 aa12.2□□□□□ -0.46
TCOF1-201ENST00000323668 HAPLN4Q86UW8 402 aa12.2□□□□□ -0.46
TCOF1-201ENST00000323668 SRSF12Q8WXF0 261 aaKnown RBP12.2□□□□□ -0.46
TCOF1-201ENST00000323668 TMEM70Q9BUB7 260 aa12.2□□□□□ -0.46
TCOF1-201ENST00000323668 C9JCJ5 164 aa12.2□□□□□ -0.46
TCOF1-201ENST00000323668 KIR2DL2P43627 348 aaPredicted RBP12.2□□□□□ -0.46
TCOF1-201ENST00000323668 MEF2CQ06413 473 aaPredicted RBP12.2□□□□□ -0.46
TCOF1-201ENST00000323668 PCDH15Q96QU1 1955 aa12.2□□□□□ -0.46
TCOF1-201ENST00000323668 PPOXP50336 477 aa12.2□□□□□ -0.46
TCOF1-201ENST00000323668 C21orf62-AS1Q17RA5 79 aa12.2□□□□□ -0.46
TCOF1-201ENST00000323668 C2orf88Q9BSF0 95 aa12.2□□□□□ -0.46
TCOF1-201ENST00000323668 PCNX1Q96RV3 2341 aa12.19□□□□□ -0.46
TCOF1-201ENST00000323668 CEP350Q5VT06 3117 aa12.19□□□□□ -0.46
TCOF1-201ENST00000323668 J3QR89 54 aa12.19□□□□□ -0.46
TCOF1-201ENST00000323668 SELLP14151 372 aa12.19□□□□□ -0.46
TCOF1-201ENST00000323668 GOLT1AQ6ZVE7 132 aa12.19□□□□□ -0.46
TCOF1-201ENST00000323668 ZNF124Q15973 351 aa12.19□□□□□ -0.46
TCOF1-201ENST00000323668 FOXA2Q9Y261 457 aaPredicted RBP12.19□□□□□ -0.46
TCOF1-201ENST00000323668 ZNF324O75467 553 aaPredicted RBP12.19□□□□□ -0.46
TCOF1-201ENST00000323668 TNFSF13O75888 250 aa12.19□□□□□ -0.46
TCOF1-201ENST00000323668 LMO1P25800 156 aa12.19□□□□□ -0.46
TCOF1-201ENST00000323668 LOC389332A0A1B0GUA5 103 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 HIGD1CA8MV81 97 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 MBNL2Q5VZF2 373 aaKnown RBP12.18□□□□□ -0.46
TCOF1-201ENST00000323668 GPR82Q96P67 336 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 PRDM13Q9H4Q3 707 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 ZNF257Q9Y2Q1 563 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 USF3Q68DE3 2245 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 UTRNP46939 3433 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 A8MWP6 167 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 ERVK11-1P61568 191 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 GTF2H5Q6ZYL4 71 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 CCL3L1P16619 93 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 TMEM189A5PLL7 270 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 A6NDN8 102 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 OR2J3O76001 311 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 HLA-DRB1P01911 266 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 HOXA4Q00056 320 aaPredicted RBP12.18□□□□□ -0.46
TCOF1-201ENST00000323668 NEU1Q99519 415 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 TMUB1Q9BVT8 246 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 C1RLQ9NZP8 487 aa12.18□□□□□ -0.46
TCOF1-201ENST00000323668 AREGP15514 252 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 NUTF2P61970 127 aaKnown RBP12.17□□□□□ -0.46
TCOF1-201ENST00000323668 DTX1Q86Y01 620 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 FREM1Q5H8C1 2179 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 LIPFP07098 398 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 CD59P13987 128 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 CD33P20138 364 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 FOXC1Q12948 553 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 PLSCR4Q9NRQ2 329 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 RPUSD1Q9UJJ7 312 aaKnown RBP12.17□□□□□ -0.46
TCOF1-201ENST00000323668 PYYP10082 97 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 FCGR2BP31994 310 aaPredicted RBP12.17□□□□□ -0.46
TCOF1-201ENST00000323668 GPR6P46095 362 aaPredicted RBP12.17□□□□□ -0.46
TCOF1-201ENST00000323668 OR10J3Q5JRS4 329 aa12.17□□□□□ -0.46
TCOF1-201ENST00000323668 DMRTA1Q5VZB9 504 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms