RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 C9orf62Q8N4C0 152 aa11.22□□□□□ -0.61
RFFL-201ENST00000315249 KLHL30-AS1Q8NEE0 82 aa11.22□□□□□ -0.61
RFFL-201ENST00000315249 ELOBQ15370 118 aa11.22□□□□□ -0.61
RFFL-201ENST00000315249 CLRN3Q8NCR9 226 aa11.22□□□□□ -0.61
RFFL-201ENST00000315249 A0A087WV48 116 aa11.22□□□□□ -0.61
RFFL-201ENST00000315249 FAM74A7A6NL05 159 aa11.22□□□□□ -0.61
RFFL-201ENST00000315249 RPS11P62280 158 aaKnown RBP eCLIP11.22□□□□□ -0.61
RFFL-201ENST00000315249 LCNL1Q6ZST4 164 aa11.22□□□□□ -0.61
RFFL-201ENST00000315249 HLA-DRB1P01911 266 aa11.21□□□□□ -0.61
RFFL-201ENST00000315249 TRGC1P0CF51 173 aa11.21□□□□□ -0.61
RFFL-201ENST00000315249 RPS20P60866 119 aaKnown RBP11.21□□□□□ -0.61
RFFL-201ENST00000315249 MEF2BQ02080 365 aaPredicted RBP11.21□□□□□ -0.61
RFFL-201ENST00000315249 C19orf24Q9BVV8 132 aa11.21□□□□□ -0.61
RFFL-201ENST00000315249 TRAV41A0A0B4J266 112 aa11.21□□□□□ -0.61
RFFL-201ENST00000315249 GGCTO75223 188 aaKnown RBP11.21□□□□□ -0.61
RFFL-201ENST00000315249 IL6RP08887 468 aaPredicted RBP11.21□□□□□ -0.61
RFFL-201ENST00000315249 ZNF345Q14585 488 aa11.21□□□□□ -0.61
RFFL-201ENST00000315249 SPSB4Q96A44 273 aa11.21□□□□□ -0.61
RFFL-201ENST00000315249 GCSHP23434 173 aa11.21□□□□□ -0.61
RFFL-201ENST00000315249 IGKV1-9A0A0C4DH69 117 aa11.21□□□□□ -0.61
RFFL-201ENST00000315249 COX19Q49B96 90 aa11.21□□□□□ -0.61
RFFL-201ENST00000315249 RPUSD1Q9UJJ7 312 aaKnown RBP11.21□□□□□ -0.61
RFFL-201ENST00000315249 MUC21A0A0G2JKD1 596 aa11.21□□□□□ -0.62
RFFL-201ENST00000315249 MUC21A0A140T8X8 626 aa11.21□□□□□ -0.62
RFFL-201ENST00000315249 TMEM218A2RU14 115 aa11.21□□□□□ -0.62
RFFL-201ENST00000315249 IGHV1-8P0DP01 117 aa11.21□□□□□ -0.62
RFFL-201ENST00000315249 ADIPOQQ15848 244 aa11.21□□□□□ -0.62
RFFL-201ENST00000315249 MUC21Q5SSG8 566 aa11.21□□□□□ -0.62
RFFL-201ENST00000315249 UBE2DNLQ8IWF7 75 aa11.21□□□□□ -0.62
RFFL-201ENST00000315249 TNFRSF18Q9Y5U5 241 aa11.21□□□□□ -0.62
RFFL-201ENST00000315249 DHRS11Q6UWP2 260 aa11.21□□□□□ -0.62
RFFL-201ENST00000315249 NPDC1Q9NQX5 325 aaPredicted RBP11.21□□□□□ -0.62
RFFL-201ENST00000315249 LILRA1O75019 489 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 RNASEH2CQ8TDP1 164 aaKnown RBP11.2□□□□□ -0.62
RFFL-201ENST00000315249 GATAD1Q8WUU5 269 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 RNASE1P07998 156 aaKnown RBP11.2□□□□□ -0.62
RFFL-201ENST00000315249 ATP5IP56385 69 aaPredicted RBP11.2□□□□□ -0.62
RFFL-201ENST00000315249 B3GALT5-AS1P59052 145 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 TMEM191AQ9H0A3 160 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 MED13Q9UHV7 2174 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 C5orf52A6NGY3 159 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 SRRM5B3KS81 715 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 CXCL2P19875 107 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 UQCRFS1P47985 274 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 LYPD2Q6UXB3 125 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 NABP1Q96AH0 204 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 ATG101Q9BSB4 218 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 MDKP21741 143 aaPredicted RBP11.2□□□□□ -0.62
RFFL-201ENST00000315249 PAX8Q06710 450 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 LYPD3O95274 346 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 MAP1LC3AQ9H492 121 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 DYSFO75923 2080 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 C7orf77A4D0Y5 90 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 UPK2O00526 184 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 RPL35AP18077 110 aaKnown RBP11.2□□□□□ -0.62
RFFL-201ENST00000315249 TFF3Q07654 80 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 RNF151Q2KHN1 245 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 SIGIRRQ6IA17 410 aa11.2□□□□□ -0.62
RFFL-201ENST00000315249 GEMIN7Q9H840 131 aaKnown RBP11.2□□□□□ -0.62
RFFL-201ENST00000315249 OR9G9P0C7N8 305 aa11.19□□□□□ -0.62
RFFL-201ENST00000315249 TMEM183BQ1AE95 376 aa11.19□□□□□ -0.62
RFFL-201ENST00000315249 PPP1R17O96001 155 aa11.19□□□□□ -0.62
RFFL-201ENST00000315249 MSMBP08118 114 aa11.19□□□□□ -0.62
RFFL-201ENST00000315249 CRYGSP22914 178 aa11.19□□□□□ -0.62
RFFL-201ENST00000315249 SULT1A2P50226 295 aa11.19□□□□□ -0.62
RFFL-201ENST00000315249 LEMD1Q68G75 181 aa11.19□□□□□ -0.62
RFFL-201ENST00000315249 DENND4CQ5VZ89 1909 aa11.19□□□□□ -0.62
RFFL-201ENST00000315249 ZNF343Q6P1L6 599 aa11.19□□□□□ -0.62
RFFL-201ENST00000315249 PRB4P10163 310 aaPredicted RBP11.19□□□□□ -0.62
RFFL-201ENST00000315249 EGR1P18146 543 aa11.19□□□□□ -0.62
RFFL-201ENST00000315249 GCHFRP30047 84 aa11.19□□□□□ -0.62
RFFL-201ENST00000315249 FAM3BP58499 235 aaPredicted RBP11.19□□□□□ -0.62
RFFL-201ENST00000315249 RUSC1-AS1Q66K80 236 aa11.19□□□□□ -0.62
RFFL-201ENST00000315249 TMEM101Q96IK0 257 aa11.19□□□□□ -0.62
RFFL-201ENST00000315249 SAPCD1Q5SSQ6 148 aa11.18□□□□□ -0.62
RFFL-201ENST00000315249 TPTE2P1Q5T6R2 138 aa11.18□□□□□ -0.62
RFFL-201ENST00000315249 KIR2DL4Q99706 377 aa11.18□□□□□ -0.62
RFFL-201ENST00000315249 BEX4Q9NWD9 120 aaPredicted RBP11.18□□□□□ -0.62
RFFL-201ENST00000315249 CGAP01215 116 aa11.18□□□□□ -0.62
RFFL-201ENST00000315249 IGKV1D-13A0A0B4J2D9 117 aa11.18□□□□□ -0.62
RFFL-201ENST00000315249 IGKV1-13P0DP09 117 aa11.18□□□□□ -0.62
RFFL-201ENST00000315249 ASIPP42127 132 aa11.18□□□□□ -0.62
RFFL-201ENST00000315249 KIR3DL3Q8N743 410 aa11.18□□□□□ -0.62
RFFL-201ENST00000315249 OR52E5Q8NH55 327 aa11.18□□□□□ -0.62
RFFL-201ENST00000315249 PLCE1Q9P212 2302 aa11.18□□□□□ -0.62
RFFL-201ENST00000315249 GCGP01275 180 aa11.18□□□□□ -0.62
RFFL-201ENST00000315249 CD7P09564 240 aa11.18□□□□□ -0.62
RFFL-201ENST00000315249 NMUP48645 174 aa11.18□□□□□ -0.62
RFFL-201ENST00000315249 IGFBP3P17936 291 aaPredicted RBP11.18□□□□□ -0.62
RFFL-201ENST00000315249 OR10W1Q8NGF6 305 aa11.18□□□□□ -0.62
RFFL-201ENST00000315249 TRBV6-7A0A0A0MS04 114 aa11.18□□□□□ -0.62
RFFL-201ENST00000315249 SAA4P35542 130 aa11.18□□□□□ -0.62
RFFL-201ENST00000315249 IL17RELQ6ZVW7 336 aa11.18□□□□□ -0.62
RFFL-201ENST00000315249 CD74P04233 296 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 RARRES2Q99969 163 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 NPCDR1Q9BY65 106 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 CDC42EP3Q9UKI2 254 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 SDF2L1Q9HCN8 221 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 PLSCR2Q9NRY7 297 aa11.17□□□□□ -0.62
RFFL-201ENST00000315249 IGHV1-3A0A0C4DH29 117 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms