RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 TMEM54Q969K7 222 aa13.15□□□□□ -0.3
HCFC1-201ENST00000310441 SSBP3Q9BWW4 388 aaPredicted RBP13.15□□□□□ -0.3
HCFC1-201ENST00000310441 TMEM167AQ8TBQ9 72 aa13.15□□□□□ -0.3
HCFC1-201ENST00000310441 C21orf62Q9NYP8 219 aa13.15□□□□□ -0.3
HCFC1-201ENST00000310441 OR52E5Q8NH55 327 aa13.15□□□□□ -0.3
HCFC1-201ENST00000310441 NPIPB3Q92617 1050 aa13.15□□□□□ -0.3
HCFC1-201ENST00000310441 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.15□□□□□ -0.31
HCFC1-201ENST00000310441 FAM90A9PA6NNJ1 464 aa13.15□□□□□ -0.31
HCFC1-201ENST00000310441 M0R2P5 195 aa13.15□□□□□ -0.31
HCFC1-201ENST00000310441 SRSF4Q08170 494 aaKnown RBP13.14□□□□□ -0.31
HCFC1-201ENST00000310441 OPN3Q9H1Y3 402 aaPredicted RBP13.14□□□□□ -0.31
HCFC1-201ENST00000310441 GLRXP35754 106 aa13.14□□□□□ -0.31
HCFC1-201ENST00000310441 COQ2Q96H96 371 aa13.14□□□□□ -0.31
HCFC1-201ENST00000310441 LINC01587Q99440 93 aa13.14□□□□□ -0.31
HCFC1-201ENST00000310441 SEPSECSQ9HD40 501 aaKnown RBP13.14□□□□□ -0.31
HCFC1-201ENST00000310441 COL9A1P20849 921 aa13.14□□□□□ -0.31
HCFC1-201ENST00000310441 HOXD3P31249 432 aaPredicted RBP13.14□□□□□ -0.31
HCFC1-201ENST00000310441 CT83Q5H943 113 aa13.14□□□□□ -0.31
HCFC1-201ENST00000310441 OBSL1O75147 1896 aa13.14□□□□□ -0.31
HCFC1-201ENST00000310441 ZNF562Q6V9R5 426 aa13.14□□□□□ -0.31
HCFC1-201ENST00000310441 ZNF501Q96CX3 271 aaPredicted RBP13.14□□□□□ -0.31
HCFC1-201ENST00000310441 SNAI3Q3KNW1 292 aa13.14□□□□□ -0.31
HCFC1-201ENST00000310441 DPM3Q9P2X0 92 aa13.14□□□□□ -0.31
HCFC1-201ENST00000310441 TRGV11A0A075B6L2 103 aa13.14□□□□□ -0.31
HCFC1-201ENST00000310441 ITLN2Q8WWU7 325 aaPredicted RBP13.14□□□□□ -0.31
HCFC1-201ENST00000310441 IGHV4-39P01824 125 aa13.13□□□□□ -0.31
HCFC1-201ENST00000310441 TPRX1Q8N7U7 411 aa13.13□□□□□ -0.31
HCFC1-201ENST00000310441 DNAJC30Q96LL9 226 aa13.13□□□□□ -0.31
HCFC1-201ENST00000310441 IFI27L2Q9H2X8 130 aa13.13□□□□□ -0.31
HCFC1-201ENST00000310441 DUSP14O95147 198 aaKnown RBP13.13□□□□□ -0.31
HCFC1-201ENST00000310441 FHL5Q5TD97 284 aa13.13□□□□□ -0.31
HCFC1-201ENST00000310441 Q9H3A6 140 aa13.13□□□□□ -0.31
HCFC1-201ENST00000310441 DRAM1Q8N682 238 aa13.13□□□□□ -0.31
HCFC1-201ENST00000310441 FNDC1Q4ZHG4 1894 aaPredicted RBP13.13□□□□□ -0.31
HCFC1-201ENST00000310441 RASL11AQ6T310 242 aa13.13□□□□□ -0.31
HCFC1-201ENST00000310441 OR9G4Q8NGQ1 327 aa13.13□□□□□ -0.31
HCFC1-201ENST00000310441 MOSP00540 346 aa13.13□□□□□ -0.31
HCFC1-201ENST00000310441 GAGE13Q4V321 117 aa13.13□□□□□ -0.31
HCFC1-201ENST00000310441 PVRIGQ6DKI7 326 aa13.13□□□□□ -0.31
HCFC1-201ENST00000310441 CST9LQ9H4G1 147 aa13.13□□□□□ -0.31
HCFC1-201ENST00000310441 ITGBL1O95965 494 aaPredicted RBP13.12□□□□□ -0.31
HCFC1-201ENST00000310441 ACP7Q6ZNF0 438 aa13.12□□□□□ -0.31
HCFC1-201ENST00000310441 LAMTOR2Q9Y2Q5 125 aa13.12□□□□□ -0.31
HCFC1-201ENST00000310441 MED13Q9UHV7 2174 aa13.12□□□□□ -0.31
HCFC1-201ENST00000310441 FABP5P3A8MUU1 101 aa13.12□□□□□ -0.31
HCFC1-201ENST00000310441 C9orf50Q5SZB4 431 aa13.12□□□□□ -0.31
HCFC1-201ENST00000310441 TM2D1Q9BX74 207 aa13.12□□□□□ -0.31
HCFC1-201ENST00000310441 BHLHA9Q7RTU4 235 aa13.12□□□□□ -0.31
HCFC1-201ENST00000310441 SPINT1O43278 529 aa13.12□□□□□ -0.31
HCFC1-201ENST00000310441 FOXS1O43638 330 aa13.12□□□□□ -0.31
HCFC1-201ENST00000310441 GZMMP51124 257 aa13.12□□□□□ -0.31
HCFC1-201ENST00000310441 PNKDQ8N490 385 aa13.12□□□□□ -0.31
HCFC1-201ENST00000310441 IL11P20809 199 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 PLXNA3P51805 1871 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 HSD52Q0P140 79 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 TRAV9-2A0A087WT02 112 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 GSN-AS1Q9NRJ2 163 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 EML5Q05BV3 1969 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 IGLV1-36A0A0B4J1U3 117 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 A0A0G2JMZ2 1700 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 LRRC37A2A6NM11 1700 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 LRRC37AA6NMS7 1700 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 GAGE2BQ13066 116 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 GAGE2EQ4V326 116 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 GAGE2DQ9UEU5 116 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 TICRRQ7Z2Z1 1910 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 IGKV1D-16P01601 117 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 STHQ8IWL8 128 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 ORAOV1Q8WV07 137 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 ZPLD1Q8TCW7 415 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 ASPHD2Q6ICH7 369 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 WBP1LQ9NX94 342 aa13.11□□□□□ -0.31
HCFC1-201ENST00000310441 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.1□□□□□ -0.31
HCFC1-201ENST00000310441 BRWD3Q6RI45 1802 aa13.1□□□□□ -0.31
HCFC1-201ENST00000310441 TRAV12-3A0A0B4J271 114 aa13.1□□□□□ -0.31
HCFC1-201ENST00000310441 FBXL7Q9UJT9 491 aa13.1□□□□□ -0.31
HCFC1-201ENST00000310441 FOXA2Q9Y261 457 aaPredicted RBP13.1□□□□□ -0.31
HCFC1-201ENST00000310441 LINC00312Q9Y6C7 94 aa13.1□□□□□ -0.31
HCFC1-201ENST00000310441 F8WEM9 126 aa13.1□□□□□ -0.31
HCFC1-201ENST00000310441 FUT5Q11128 374 aa13.1□□□□□ -0.31
HCFC1-201ENST00000310441 MRPL20Q9BYC9 149 aaKnown RBP13.1□□□□□ -0.31
HCFC1-201ENST00000310441 ZNF703Q9H7S9 590 aaPredicted RBP13.1□□□□□ -0.31
HCFC1-201ENST00000310441 SNRPCP09234 159 aaKnown RBP13.1□□□□□ -0.31
HCFC1-201ENST00000310441 LAGE3Q14657 143 aa13.1□□□□□ -0.31
HCFC1-201ENST00000310441 LY6EQ16553 131 aa13.1□□□□□ -0.31
HCFC1-201ENST00000310441 CITED1Q99966 193 aa13.1□□□□□ -0.31
HCFC1-201ENST00000310441 CGAP01215 116 aa13.09□□□□□ -0.31
HCFC1-201ENST00000310441 TMEM249Q2WGJ8 235 aa13.09□□□□□ -0.31
HCFC1-201ENST00000310441 LDLRAD2Q5SZI1 272 aa13.09□□□□□ -0.31
HCFC1-201ENST00000310441 ZAR1Q86SH2 424 aa13.09□□□□□ -0.31
HCFC1-201ENST00000310441 JPT2Q9H910 190 aa13.09□□□□□ -0.31
HCFC1-201ENST00000310441 PILRBQ9UKJ0 227 aa13.09□□□□□ -0.31
HCFC1-201ENST00000310441 IGKCP01834 107 aa13.09□□□□□ -0.31
HCFC1-201ENST00000310441 PPP1R27Q86WC6 154 aa13.09□□□□□ -0.31
HCFC1-201ENST00000310441 CD7P09564 240 aa13.09□□□□□ -0.31
HCFC1-201ENST00000310441 PEBP1P30086 187 aaKnown RBP13.09□□□□□ -0.31
HCFC1-201ENST00000310441 FOXA3P55318 350 aaPredicted RBP13.09□□□□□ -0.31
HCFC1-201ENST00000310441 MRPL52Q86TS9 123 aaKnown RBP13.09□□□□□ -0.31
HCFC1-201ENST00000310441 MED13LQ71F56 2210 aa13.09□□□□□ -0.31
HCFC1-201ENST00000310441 LINC00614P0C842 121 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms