RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 LHX2P50458 406 aa16.11■□□□□ 0.17
USP48-201ENST00000308271 NPIPB11E5RHQ5 1161 aa16.11■□□□□ 0.17
USP48-201ENST00000308271 MORN2Q502X0 79 aa16.11■□□□□ 0.17
USP48-201ENST00000308271 OR9G1Q8NH87 305 aa16.11■□□□□ 0.17
USP48-201ENST00000308271 ZNF524Q96C55 264 aa16.11■□□□□ 0.17
USP48-201ENST00000308271 LIME1Q9H400 295 aa16.11■□□□□ 0.17
USP48-201ENST00000308271 POLR3KQ9Y2Y1 108 aaPredicted RBP16.11■□□□□ 0.17
USP48-201ENST00000308271 REG1AP05451 166 aa16.11■□□□□ 0.17
USP48-201ENST00000308271 TRIP6Q15654 476 aaKnown RBP16.11■□□□□ 0.17
USP48-201ENST00000308271 OR4A5Q8NH83 315 aa16.11■□□□□ 0.17
USP48-201ENST00000308271 TYMSP04818 313 aa16.11■□□□□ 0.17
USP48-201ENST00000308271 CD3EP07766 207 aa16.11■□□□□ 0.17
USP48-201ENST00000308271 SNRNP200O75643 2136 aaKnown RBP16.1■□□□□ 0.17
USP48-201ENST00000308271 SSBP4Q9BWG4 385 aaPredicted RBP16.1■□□□□ 0.17
USP48-201ENST00000308271 ETV2O00321 342 aaPredicted RBP16.1■□□□□ 0.17
USP48-201ENST00000308271 CD40P25942 277 aa16.1■□□□□ 0.17
USP48-201ENST00000308271 UPK2O00526 184 aa16.1■□□□□ 0.17
USP48-201ENST00000308271 CECR9P0C854 216 aa16.1■□□□□ 0.17
USP48-201ENST00000308271 FCGR2BP31994 310 aaPredicted RBP16.1■□□□□ 0.17
USP48-201ENST00000308271 GGNQ86UU5 652 aa16.1■□□□□ 0.17
USP48-201ENST00000308271 HIST1H4GQ99525 98 aa16.1■□□□□ 0.17
USP48-201ENST00000308271 CLEC5AQ9NY25 188 aa16.1■□□□□ 0.17
USP48-201ENST00000308271 TM4SF5O14894 197 aa16.09■□□□□ 0.17
USP48-201ENST00000308271 CD33P20138 364 aa16.09■□□□□ 0.17
USP48-201ENST00000308271 LDLRAD2Q5SZI1 272 aa16.09■□□□□ 0.17
USP48-201ENST00000308271 Q6AWC8 147 aa16.09■□□□□ 0.17
USP48-201ENST00000308271 LRRK1Q38SD2 2015 aa16.09■□□□□ 0.17
USP48-201ENST00000308271 BDP1A6H8Y1 2624 aa16.09■□□□□ 0.17
USP48-201ENST00000308271 GPX1P07203 203 aa16.09■□□□□ 0.17
USP48-201ENST00000308271 PAX9P55771 341 aa16.09■□□□□ 0.17
USP48-201ENST00000308271 RNF115Q9Y4L5 304 aa16.09■□□□□ 0.17
USP48-201ENST00000308271 SNAI2O43623 268 aa16.09■□□□□ 0.17
USP48-201ENST00000308271 ZNF841Q6ZN19 808 aa16.09■□□□□ 0.17
USP48-201ENST00000308271 RASL11AQ6T310 242 aa16.09■□□□□ 0.17
USP48-201ENST00000308271 ATP5L2Q7Z4Y8 100 aa16.09■□□□□ 0.17
USP48-201ENST00000308271 TMUB1Q9BVT8 246 aa16.09■□□□□ 0.17
USP48-201ENST00000308271 TRAV30A0A087WSZ9 112 aa16.08■□□□□ 0.17
USP48-201ENST00000308271 SFTPCP11686 197 aa16.08■□□□□ 0.17
USP48-201ENST00000308271 PSG9Q00887 426 aa16.08■□□□□ 0.17
USP48-201ENST00000308271 PRELID3AQ96N28 172 aa16.08■□□□□ 0.17
USP48-201ENST00000308271 GLRXP35754 106 aa16.08■□□□□ 0.16
USP48-201ENST00000308271 C1orf162Q8NEQ5 155 aaPredicted RBP16.08■□□□□ 0.16
USP48-201ENST00000308271 TSKUQ8WUA8 353 aa16.08■□□□□ 0.16
USP48-201ENST00000308271 CHCHD1Q96BP2 118 aaKnown RBP16.08■□□□□ 0.16
USP48-201ENST00000308271 A0A1W2PRD5 423 aa16.08■□□□□ 0.16
USP48-201ENST00000308271 A0A1W2PRF3 423 aa16.08■□□□□ 0.16
USP48-201ENST00000308271 A0A1W2PRM7 423 aa16.08■□□□□ 0.16
USP48-201ENST00000308271 C3orf79P0CE67 100 aa16.08■□□□□ 0.16
USP48-201ENST00000308271 FOXF2Q12947 444 aa16.08■□□□□ 0.16
USP48-201ENST00000308271 CELA3BP08861 270 aa16.07■□□□□ 0.16
USP48-201ENST00000308271 CX3CL1P78423 397 aa16.07■□□□□ 0.16
USP48-201ENST00000308271 HIST1H1AQ02539 215 aaPredicted RBP16.07■□□□□ 0.16
USP48-201ENST00000308271 ORAOV1Q8WV07 137 aa16.07■□□□□ 0.16
USP48-201ENST00000308271 RAB1BQ9H0U4 201 aa16.07■□□□□ 0.16
USP48-201ENST00000308271 RALYQ9UKM9 306 aaKnown RBP16.07■□□□□ 0.16
USP48-201ENST00000308271 KIAA2026Q5HYC2 2103 aa16.07■□□□□ 0.16
USP48-201ENST00000308271 SPTAN1Q13813 2472 aaKnown RBP16.07■□□□□ 0.16
USP48-201ENST00000308271 AREGP15514 252 aa16.07■□□□□ 0.16
USP48-201ENST00000308271 WDR82Q6UXN9 313 aa16.07■□□□□ 0.16
USP48-201ENST00000308271 SPCS1Q9Y6A9 102 aa16.07■□□□□ 0.16
USP48-201ENST00000308271 CD69Q07108 199 aa16.07■□□□□ 0.16
USP48-201ENST00000308271 UNQ5815/PRO19632Q6UWF5 114 aa16.07■□□□□ 0.16
USP48-201ENST00000308271 KLK10O43240 276 aa16.07■□□□□ 0.16
USP48-201ENST00000308271 WISP1O95388 367 aa16.07■□□□□ 0.16
USP48-201ENST00000308271 PEAR1Q5VY43 1037 aaPredicted RBP16.07■□□□□ 0.16
USP48-201ENST00000308271 MGST2Q99735 147 aa16.07■□□□□ 0.16
USP48-201ENST00000308271 HELZP42694 1942 aaKnown RBP16.06■□□□□ 0.16
USP48-201ENST00000308271 NBASA2RRP1 2371 aa16.06■□□□□ 0.16
USP48-201ENST00000308271 DLX1P56177 255 aa16.06■□□□□ 0.16
USP48-201ENST00000308271 PRCDQ00LT1 54 aa16.06■□□□□ 0.16
USP48-201ENST00000308271 CCDC144NLQ6NUI1 221 aa16.06■□□□□ 0.16
USP48-201ENST00000308271 EPDR1Q9UM22 224 aa16.06■□□□□ 0.16
USP48-201ENST00000308271 C7orf71A4D174 169 aa16.06■□□□□ 0.16
USP48-201ENST00000308271 Q0VG73 95 aa16.06■□□□□ 0.16
USP48-201ENST00000308271 C2orf83Q53S99 150 aa16.06■□□□□ 0.16
USP48-201ENST00000308271 SAA2-SAA4A0A096LPE2 208 aa16.06■□□□□ 0.16
USP48-201ENST00000308271 H3BVH4 76 aa16.06■□□□□ 0.16
USP48-201ENST00000308271 SAA2P0DJI9 122 aaPredicted RBP16.06■□□□□ 0.16
USP48-201ENST00000308271 UBE2V1Q13404 147 aa16.06■□□□□ 0.16
USP48-201ENST00000308271 TMEM78Q5T7P6 136 aa16.06■□□□□ 0.16
USP48-201ENST00000308271 SEPSECSQ9HD40 501 aaKnown RBP16.06■□□□□ 0.16
USP48-201ENST00000308271 LOC107984156A0A0G2JMH3 177 aa16.06■□□□□ 0.16
USP48-201ENST00000308271 ARL17AQ8IVW1 177 aa16.06■□□□□ 0.16
USP48-201ENST00000308271 MRPL27Q9P0M9 148 aaKnown RBP16.06■□□□□ 0.16
USP48-201ENST00000308271 THSD7BQ9C0I4 1608 aa16.05■□□□□ 0.16
USP48-201ENST00000308271 IGKV1-6A0A0C4DH72 117 aa16.05■□□□□ 0.16
USP48-201ENST00000308271 CA1P00915 261 aaPredicted RBP16.05■□□□□ 0.16
USP48-201ENST00000308271 IGHV1-2P23083 117 aa16.05■□□□□ 0.16
USP48-201ENST00000308271 MFAP4P55083 255 aa16.05■□□□□ 0.16
USP48-201ENST00000308271 ZNF585BQ52M93 769 aa16.05■□□□□ 0.16
USP48-201ENST00000308271 GPR179Q6PRD1 2367 aa16.05■□□□□ 0.16
USP48-201ENST00000308271 C1orf185Q5T7R7 199 aa16.05■□□□□ 0.16
USP48-201ENST00000308271 C5orf30Q96GV9 206 aa16.05■□□□□ 0.16
USP48-201ENST00000308271 MGPP08493 103 aa16.05■□□□□ 0.16
USP48-201ENST00000308271 ANOS1P23352 680 aa16.05■□□□□ 0.16
USP48-201ENST00000308271 LTBRP36941 435 aa16.05■□□□□ 0.16
USP48-201ENST00000308271 ZNF788Q6ZQV5 615 aa16.05■□□□□ 0.16
USP48-201ENST00000308271 ZNF502Q8TBZ5 544 aa16.05■□□□□ 0.16
USP48-201ENST00000308271 FAM181BA6NEQ2 426 aa16.04■□□□□ 0.16
USP48-201ENST00000308271 SPATA31B1PQ5VZV4 182 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms