RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 TRAV10A0A0B4J240 114 aa10.76□□□□□ -0.69
CCDC88B-201ENST00000301897 GPR31O00270 319 aa10.76□□□□□ -0.69
CCDC88B-201ENST00000301897 MT-CO2P00403 227 aa10.76□□□□□ -0.69
CCDC88B-201ENST00000301897 FCER2P06734 321 aa10.76□□□□□ -0.69
CCDC88B-201ENST00000301897 NPBWR1P48145 328 aa10.76□□□□□ -0.69
CCDC88B-201ENST00000301897 TAS2R46P59540 309 aa10.76□□□□□ -0.69
CCDC88B-201ENST00000301897 DEFB131AP59861 70 aa10.76□□□□□ -0.69
CCDC88B-201ENST00000301897 MXD1Q05195 221 aa10.76□□□□□ -0.69
CCDC88B-201ENST00000301897 IDNKQ5T6J7 187 aa10.76□□□□□ -0.69
CCDC88B-201ENST00000301897 MORN3Q6PF18 240 aaPredicted RBP10.76□□□□□ -0.69
CCDC88B-201ENST00000301897 ZNF414Q96IQ9 312 aa10.76□□□□□ -0.69
CCDC88B-201ENST00000301897 ZNF2Q9BSG1 426 aaPredicted RBP10.76□□□□□ -0.69
CCDC88B-201ENST00000301897 MUC4Q99102 2169 aa10.75□□□□□ -0.69
CCDC88B-201ENST00000301897 SPP1P10451 314 aa10.75□□□□□ -0.69
CCDC88B-201ENST00000301897 RPL11P62913 178 aaKnown RBP10.75□□□□□ -0.69
CCDC88B-201ENST00000301897 ERHP84090 104 aaKnown RBP10.75□□□□□ -0.69
CCDC88B-201ENST00000301897 LPCAT3Q6P1A2 487 aa10.75□□□□□ -0.69
CCDC88B-201ENST00000301897 OR4A16Q8NH70 328 aa10.75□□□□□ -0.69
CCDC88B-201ENST00000301897 ST8SIA2Q92186 375 aa10.75□□□□□ -0.69
CCDC88B-201ENST00000301897 RNF126Q9BV68 326 aa10.75□□□□□ -0.69
CCDC88B-201ENST00000301897 PKHD1P08F94 4074 aa10.75□□□□□ -0.69
CCDC88B-201ENST00000301897 IGHV3OR16-13A0A075B7E8 117 aa10.74□□□□□ -0.69
CCDC88B-201ENST00000301897 IGHV3-74A0A0B4J1X5 117 aa10.74□□□□□ -0.69
CCDC88B-201ENST00000301897 A0A1W2PS18 150 aa10.74□□□□□ -0.69
CCDC88B-201ENST00000301897 XRCC3O43542 346 aa10.74□□□□□ -0.69
CCDC88B-201ENST00000301897 MED14OSP0DP75 135 aa10.74□□□□□ -0.69
CCDC88B-201ENST00000301897 HLA-DMBP28068 263 aa10.74□□□□□ -0.69
CCDC88B-201ENST00000301897 RFX2P48378 723 aa10.74□□□□□ -0.69
CCDC88B-201ENST00000301897 PRCDQ00LT1 54 aa10.74□□□□□ -0.69
CCDC88B-201ENST00000301897 LEMD1Q68G75 181 aa10.74□□□□□ -0.69
CCDC88B-201ENST00000301897 TOMM20LQ6UXN7 152 aa10.74□□□□□ -0.69
CCDC88B-201ENST00000301897 ZNF600Q6ZNG1 722 aa10.74□□□□□ -0.69
CCDC88B-201ENST00000301897 H2BFWTQ7Z2G1 175 aa10.74□□□□□ -0.69
CCDC88B-201ENST00000301897 OR5H2Q8NGV7 314 aa10.74□□□□□ -0.69
CCDC88B-201ENST00000301897 OR6F1Q8NGZ6 308 aa10.74□□□□□ -0.69
CCDC88B-201ENST00000301897 GRAMD2BQ96HH9 432 aa10.74□□□□□ -0.69
CCDC88B-201ENST00000301897 YTHDF1Q9BYJ9 559 aaKnown RBP10.74□□□□□ -0.69
CCDC88B-201ENST00000301897 RNF167Q9H6Y7 350 aa10.74□□□□□ -0.69
CCDC88B-201ENST00000301897 AGRNO00468 2067 aa10.73□□□□□ -0.69
CCDC88B-201ENST00000301897 IGHV4-4A0A075B6R2 117 aa10.73□□□□□ -0.69
CCDC88B-201ENST00000301897 IGHV4-28A0A0C4DH34 117 aa10.73□□□□□ -0.69
CCDC88B-201ENST00000301897 SCGB2A1O75556 95 aa10.73□□□□□ -0.69
CCDC88B-201ENST00000301897 PVRIGQ6DKI7 326 aa10.73□□□□□ -0.69
CCDC88B-201ENST00000301897 PINX1Q96BK5 328 aaKnown RBP10.73□□□□□ -0.69
CCDC88B-201ENST00000301897 S100A16Q96FQ6 103 aaKnown RBP10.73□□□□□ -0.69
CCDC88B-201ENST00000301897 RABAC1Q9UI14 185 aa10.73□□□□□ -0.69
CCDC88B-201ENST00000301897 ANAPC10Q9UM13 185 aa10.73□□□□□ -0.69
CCDC88B-201ENST00000301897 PUS1Q9Y606 427 aaKnown RBP eCLIP10.73□□□□□ -0.69
CCDC88B-201ENST00000301897 MEIS3P1A6NDR6 274 aa10.72□□□□□ -0.69
CCDC88B-201ENST00000301897 DBX1A6NMT0 343 aa10.72□□□□□ -0.69
CCDC88B-201ENST00000301897 ZNF705EA8MWA4 302 aaPredicted RBP10.72□□□□□ -0.69
CCDC88B-201ENST00000301897 RBMY1A1P0DJD3 496 aaKnown RBP10.72□□□□□ -0.69
CCDC88B-201ENST00000301897 RBMY1CP0DJD4 496 aa10.72□□□□□ -0.69
CCDC88B-201ENST00000301897 NAT1P18440 290 aa10.72□□□□□ -0.69
CCDC88B-201ENST00000301897 NPPCP23582 126 aa10.72□□□□□ -0.69
CCDC88B-201ENST00000301897 HSPE1P61604 102 aaKnown RBP10.72□□□□□ -0.69
CCDC88B-201ENST00000301897 RBMY1FQ15415 496 aaKnown RBP10.72□□□□□ -0.69
CCDC88B-201ENST00000301897 KCTD21Q4G0X4 260 aa10.72□□□□□ -0.69
CCDC88B-201ENST00000301897 Q6ZTC4 211 aa10.72□□□□□ -0.69
CCDC88B-201ENST00000301897 TRPT1Q86TN4 253 aaKnown RBP10.72□□□□□ -0.69
CCDC88B-201ENST00000301897 CROCCP3Q8IVE0 287 aa10.72□□□□□ -0.69
CCDC88B-201ENST00000301897 NARS2Q96I59 477 aaKnown RBP10.72□□□□□ -0.69
CCDC88B-201ENST00000301897 SEC22AQ96IW7 307 aa10.72□□□□□ -0.69
CCDC88B-201ENST00000301897 PMP2P02689 132 aa10.71□□□□□ -0.69
CCDC88B-201ENST00000301897 AMBPP02760 352 aa10.71□□□□□ -0.69
CCDC88B-201ENST00000301897 P0DMU3 169 aa10.71□□□□□ -0.69
CCDC88B-201ENST00000301897 FAM231AP0DMU4 169 aa10.71□□□□□ -0.69
CCDC88B-201ENST00000301897 FAM231CP0DMU5 169 aa10.71□□□□□ -0.69
CCDC88B-201ENST00000301897 SNCAP37840 140 aa10.71□□□□□ -0.69
CCDC88B-201ENST00000301897 LILRB2Q8N423 598 aa10.71□□□□□ -0.69
CCDC88B-201ENST00000301897 FXYD6Q9H0Q3 95 aa10.71□□□□□ -0.69
CCDC88B-201ENST00000301897 ZFAND3Q9H8U3 227 aa10.71□□□□□ -0.69
CCDC88B-201ENST00000301897 TBC1D24Q9ULP9 559 aa10.71□□□□□ -0.69
CCDC88B-201ENST00000301897 LOC100506127A0A0U1RQW1 187 aa10.7□□□□□ -0.7
CCDC88B-201ENST00000301897 K7EQG2 157 aa10.7□□□□□ -0.7
CCDC88B-201ENST00000301897 CORTO00230 105 aa10.7□□□□□ -0.7
CCDC88B-201ENST00000301897 IGHV3-48P01763 117 aa10.7□□□□□ -0.7
CCDC88B-201ENST00000301897 APOHP02749 345 aaPredicted RBP10.7□□□□□ -0.7
CCDC88B-201ENST00000301897 GIG44P09565 113 aaPredicted RBP10.7□□□□□ -0.7
CCDC88B-201ENST00000301897 EIF2B2P49770 351 aaKnown RBP10.7□□□□□ -0.7
CCDC88B-201ENST00000301897 SUB1P53999 127 aaKnown RBP eCLIP10.7□□□□□ -0.7
CCDC88B-201ENST00000301897 PHLDA2Q53GA4 152 aa10.7□□□□□ -0.7
CCDC88B-201ENST00000301897 UBE2NLQ5JXB2 153 aa10.7□□□□□ -0.7
CCDC88B-201ENST00000301897 POM121L12Q8N7R1 296 aa10.7□□□□□ -0.7
CCDC88B-201ENST00000301897 STXBP6Q8NFX7 210 aa10.7□□□□□ -0.7
CCDC88B-201ENST00000301897 METTL26Q96S19 204 aa10.7□□□□□ -0.7
CCDC88B-201ENST00000301897 A0A1B0GVY2 172 aa10.69□□□□□ -0.7
CCDC88B-201ENST00000301897 INS-IGF2F8WCM5 200 aa10.69□□□□□ -0.7
CCDC88B-201ENST00000301897 TMEM50AO95807 157 aa10.69□□□□□ -0.7
CCDC88B-201ENST00000301897 PRSS3P35030 304 aa10.69□□□□□ -0.7
CCDC88B-201ENST00000301897 TSPAN5P62079 268 aa10.69□□□□□ -0.7
CCDC88B-201ENST00000301897 TMEM69Q5SWH9 247 aa10.69□□□□□ -0.7
CCDC88B-201ENST00000301897 TBC1D26Q86UD7 250 aa10.69□□□□□ -0.7
CCDC88B-201ENST00000301897 FAM24BQ8N5W8 94 aa10.69□□□□□ -0.7
CCDC88B-201ENST00000301897 C1QTNF4Q9BXJ3 329 aa10.69□□□□□ -0.7
CCDC88B-201ENST00000301897 Q9H521 79 aa10.69□□□□□ -0.7
CCDC88B-201ENST00000301897 ELOA3CA0A087WX78 387 aaPredicted RBP10.68□□□□□ -0.7
CCDC88B-201ENST00000301897 DEFB131BA0A096LNP1 70 aa10.68□□□□□ -0.7
CCDC88B-201ENST00000301897 IGHV3-66A0A0C4DH42 116 aa10.68□□□□□ -0.7
CCDC88B-201ENST00000301897 PRSS29PA6NIE9 313 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms