RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 ONECUT1Q9UBC0 465 aa13.6□□□□□ -0.23
CPSF4-201ENST00000292476 LSM4Q9Y4Z0 139 aaKnown RBP13.6□□□□□ -0.23
CPSF4-201ENST00000292476 AKAP9Q99996 3911 aa13.6□□□□□ -0.23
CPSF4-201ENST00000292476 YIF1AO95070 293 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 APOA2P02652 100 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 CLEC2AQ6UVW9 174 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 SSX9Q7RTT3 188 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 OR51G1Q8NGK1 321 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 FAM168AQ92567 244 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 RHOVQ96L33 236 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 SSX3Q99909 188 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 PCGF1Q9BSM1 259 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 PRNDQ9UKY0 176 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 ZNF257Q9Y2Q1 563 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 IGHV2-26A0A0B4J1V2 119 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 IFITM10A6NMD0 228 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 RRHO14718 337 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 HMGB3O15347 200 aaKnown RBP13.59□□□□□ -0.23
CPSF4-201ENST00000292476 CXorf1O96002 111 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 TRGC1P0CF51 173 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 ATP5J2P56134 94 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 HIST3H2BBQ8N257 126 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 MGST2Q99735 147 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 BPESC1Q9GZL8 116 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 ENY2Q9NPA8 101 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 PITPNC1Q9UKF7 332 aa13.59□□□□□ -0.23
CPSF4-201ENST00000292476 OTOGQ6ZRI0 2925 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 C22orf46C9J442 243 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 FOXH1O75593 365 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 IL6RP08887 468 aaPredicted RBP13.58□□□□□ -0.24
CPSF4-201ENST00000292476 STAG3L2P0CL84 134 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 STAG3L3P0CL85 134 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 NPY1RP25929 384 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 MC5RP33032 325 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 GALR1P47211 349 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 RPS16P62249 146 aaKnown RBP13.58□□□□□ -0.24
CPSF4-201ENST00000292476 RAB31Q13636 194 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 HNF4GQ14541 408 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 UTF1Q5T230 341 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 OR4A47Q6IF82 309 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 SLC24A4Q8NFF2 622 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 ABHD5Q8WTS1 349 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 FRZBQ92765 325 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 IMMP2LQ96T52 175 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 SLC35D1Q9NTN3 355 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 PXMP4Q9Y6I8 212 aa13.58□□□□□ -0.24
CPSF4-201ENST00000292476 YLPM1P49750 1951 aaKnown RBP13.58□□□□□ -0.24
CPSF4-201ENST00000292476 GGCTO75223 188 aaKnown RBP13.57□□□□□ -0.24
CPSF4-201ENST00000292476 TYMSP04818 313 aa13.57□□□□□ -0.24
CPSF4-201ENST00000292476 CT45A6P0DMU7 189 aa13.57□□□□□ -0.24
CPSF4-201ENST00000292476 CT45A5P0DMU8 189 aa13.57□□□□□ -0.24
CPSF4-201ENST00000292476 CT45A7P0DMV0 189 aa13.57□□□□□ -0.24
CPSF4-201ENST00000292476 FAM3BP58499 235 aaPredicted RBP13.57□□□□□ -0.24
CPSF4-201ENST00000292476 SPNS3Q6ZMD2 512 aa13.57□□□□□ -0.24
CPSF4-201ENST00000292476 TGIF2LXQ8IUE1 241 aa13.57□□□□□ -0.24
CPSF4-201ENST00000292476 ZNF383Q8NA42 475 aa13.57□□□□□ -0.24
CPSF4-201ENST00000292476 GATAD1Q8WUU5 269 aa13.57□□□□□ -0.24
CPSF4-201ENST00000292476 TMEM170AQ8WVE7 144 aa13.57□□□□□ -0.24
CPSF4-201ENST00000292476 ARL2-SNX15V9GYD0 113 aa13.57□□□□□ -0.24
CPSF4-201ENST00000292476 TRAV3A0A0B4J244 114 aa13.56□□□□□ -0.24
CPSF4-201ENST00000292476 PRTN3P24158 256 aa13.56□□□□□ -0.24
CPSF4-201ENST00000292476 RPL29P47914 159 aaKnown RBP13.56□□□□□ -0.24
CPSF4-201ENST00000292476 LCN2P80188 198 aa13.56□□□□□ -0.24
CPSF4-201ENST00000292476 HLA-DRB5Q30154 266 aa13.56□□□□□ -0.24
CPSF4-201ENST00000292476 DEFB113Q30KQ7 82 aa13.56□□□□□ -0.24
CPSF4-201ENST00000292476 TEPPQ6URK8 271 aa13.56□□□□□ -0.24
CPSF4-201ENST00000292476 VKORC1L1Q8N0U8 176 aa13.56□□□□□ -0.24
CPSF4-201ENST00000292476 OR5AN1Q8NGI8 311 aa13.56□□□□□ -0.24
CPSF4-201ENST00000292476 OSR1Q8TAX0 266 aaPredicted RBP13.56□□□□□ -0.24
CPSF4-201ENST00000292476 ST6GALNAC6Q969X2 333 aa13.56□□□□□ -0.24
CPSF4-201ENST00000292476 DOCK11Q5JSL3 2073 aa13.56□□□□□ -0.24
CPSF4-201ENST00000292476 IGLV1-47P01700 117 aa13.56□□□□□ -0.24
CPSF4-201ENST00000292476 COA6Q5JTJ3 125 aaKnown RBP13.56□□□□□ -0.24
CPSF4-201ENST00000292476 KCNIP4Q6PIL6 250 aa13.56□□□□□ -0.24
CPSF4-201ENST00000292476 C1orf229Q6ZS94 237 aaPredicted RBP13.56□□□□□ -0.24
CPSF4-201ENST00000292476 PDPNQ86YL7 162 aa13.56□□□□□ -0.24
CPSF4-201ENST00000292476 C10orf105Q8TEF2 133 aa13.56□□□□□ -0.24
CPSF4-201ENST00000292476 FKBP11Q9NYL4 201 aa13.56□□□□□ -0.24
CPSF4-201ENST00000292476 DMRT1Q9Y5R6 373 aa13.56□□□□□ -0.24
CPSF4-201ENST00000292476 MALRD1Q5VYJ5 2156 aa13.56□□□□□ -0.24
CPSF4-201ENST00000292476 PRRC2AP48634 2157 aaKnown RBP13.55□□□□□ -0.24
CPSF4-201ENST00000292476 PPP5D1E7EU14 171 aa13.55□□□□□ -0.24
CPSF4-201ENST00000292476 BUB1B-PAK6H3BSN5 160 aa13.55□□□□□ -0.24
CPSF4-201ENST00000292476 MT-CO2P00403 227 aa13.55□□□□□ -0.24
CPSF4-201ENST00000292476 CEACAM3P40198 252 aa13.55□□□□□ -0.24
CPSF4-201ENST00000292476 LMO4P61968 165 aa13.55□□□□□ -0.24
CPSF4-201ENST00000292476 ARF6P62330 175 aa13.55□□□□□ -0.24
CPSF4-201ENST00000292476 RHOBP62745 196 aa13.55□□□□□ -0.24
CPSF4-201ENST00000292476 OR11H6Q8NGC7 330 aa13.55□□□□□ -0.24
CPSF4-201ENST00000292476 OR4C13Q8NGP0 309 aa13.55□□□□□ -0.24
CPSF4-201ENST00000292476 UPK2O00526 184 aa13.54□□□□□ -0.24
CPSF4-201ENST00000292476 NPPCP23582 126 aa13.54□□□□□ -0.24
CPSF4-201ENST00000292476 GNB1P62873 340 aa13.54□□□□□ -0.24
CPSF4-201ENST00000292476 PRCDQ00LT1 54 aa13.54□□□□□ -0.24
CPSF4-201ENST00000292476 LINC01551Q86U37 167 aa13.54□□□□□ -0.24
CPSF4-201ENST00000292476 OR4X1Q8NH49 305 aa13.54□□□□□ -0.24
CPSF4-201ENST00000292476 MBD6Q96DN6 1003 aa13.54□□□□□ -0.24
CPSF4-201ENST00000292476 FOXC2Q99958 501 aa13.54□□□□□ -0.24
CPSF4-201ENST00000292476 MRPL20Q9BYC9 149 aaKnown RBP13.54□□□□□ -0.24
CPSF4-201ENST00000292476 POLR3KQ9Y2Y1 108 aaPredicted RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms