RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 FRZBQ92765 325 aa12.34□□□□□ -0.43
SF3B4-201ENST00000271628 SLC25A22Q9H936 323 aa12.34□□□□□ -0.43
SF3B4-201ENST00000271628 TACC2O95359 2948 aa12.34□□□□□ -0.43
SF3B4-201ENST00000271628 PHOX2AO14813 284 aa12.34□□□□□ -0.43
SF3B4-201ENST00000271628 SLC25A17O43808 307 aa12.34□□□□□ -0.43
SF3B4-201ENST00000271628 OPRK1P41145 380 aa12.34□□□□□ -0.43
SF3B4-201ENST00000271628 TEPPQ6URK8 271 aa12.34□□□□□ -0.43
SF3B4-201ENST00000271628 RAB24Q969Q5 203 aa12.34□□□□□ -0.43
SF3B4-201ENST00000271628 PYGO2Q9BRQ0 406 aa12.34□□□□□ -0.43
SF3B4-201ENST00000271628 ZNF430Q9H8G1 570 aaPredicted RBP12.34□□□□□ -0.43
SF3B4-201ENST00000271628 SRD5A3Q9H8P0 318 aa12.34□□□□□ -0.43
SF3B4-201ENST00000271628 DPM3Q9P2X0 92 aa12.34□□□□□ -0.43
SF3B4-201ENST00000271628 IGHV3-72A0A0B4J1Y9 119 aa12.33□□□□□ -0.44
SF3B4-201ENST00000271628 PFN1P07737 140 aaKnown RBP12.33□□□□□ -0.44
SF3B4-201ENST00000271628 RPL23P62829 140 aaKnown RBP12.33□□□□□ -0.44
SF3B4-201ENST00000271628 TMEM249Q2WGJ8 235 aa12.33□□□□□ -0.44
SF3B4-201ENST00000271628 MRPL41Q8IXM3 137 aaKnown RBP12.33□□□□□ -0.44
SF3B4-201ENST00000271628 MMD2Q8IY49 270 aa12.33□□□□□ -0.44
SF3B4-201ENST00000271628 PARLQ9H300 379 aa12.33□□□□□ -0.44
SF3B4-201ENST00000271628 VENTXO95231 258 aa12.33□□□□□ -0.44
SF3B4-201ENST00000271628 SUB1P53999 127 aaKnown RBP eCLIP12.33□□□□□ -0.44
SF3B4-201ENST00000271628 DNLZQ5SXM8 178 aa12.33□□□□□ -0.44
SF3B4-201ENST00000271628 TPTE2P1Q5T6R2 138 aa12.33□□□□□ -0.44
SF3B4-201ENST00000271628 RPUSD4Q96CM3 377 aaKnown RBP12.33□□□□□ -0.44
SF3B4-201ENST00000271628 ANAPC16Q96DE5 110 aa12.33□□□□□ -0.44
SF3B4-201ENST00000271628 PITPNC1Q9UKF7 332 aa12.33□□□□□ -0.44
SF3B4-201ENST00000271628 LSM4Q9Y4Z0 139 aaKnown RBP12.33□□□□□ -0.44
SF3B4-201ENST00000271628 TRAV20A0A0B4J274 112 aa12.32□□□□□ -0.44
SF3B4-201ENST00000271628 HMGB3O15347 200 aaKnown RBP12.32□□□□□ -0.44
SF3B4-201ENST00000271628 ACTL6BO94805 426 aa12.32□□□□□ -0.44
SF3B4-201ENST00000271628 RNASE2P10153 161 aaKnown RBP12.32□□□□□ -0.44
SF3B4-201ENST00000271628 PRB3Q04118 309 aaPredicted RBP12.32□□□□□ -0.44
SF3B4-201ENST00000271628 ARSJQ5FYB0 599 aaPredicted RBP12.32□□□□□ -0.44
SF3B4-201ENST00000271628 C16orf82Q7Z2V1 217 aa12.32□□□□□ -0.44
SF3B4-201ENST00000271628 LURAP1LQ8IV03 231 aa12.32□□□□□ -0.44
SF3B4-201ENST00000271628 OR10W1Q8NGF6 305 aa12.32□□□□□ -0.44
SF3B4-201ENST00000271628 OR10D4PQ8NGN7 298 aa12.32□□□□□ -0.44
SF3B4-201ENST00000271628 OR4F5Q8NH21 305 aa12.32□□□□□ -0.44
SF3B4-201ENST00000271628 RITA1Q96K30 269 aa12.32□□□□□ -0.44
SF3B4-201ENST00000271628 OR5B12Q96R08 314 aa12.32□□□□□ -0.44
SF3B4-201ENST00000271628 OR4F4Q96R69 305 aa12.32□□□□□ -0.44
SF3B4-201ENST00000271628 SSX3Q99909 188 aa12.32□□□□□ -0.44
SF3B4-201ENST00000271628 SPOCK3Q9BQ16 436 aa12.32□□□□□ -0.44
SF3B4-201ENST00000271628 TNCP24821 2201 aa12.32□□□□□ -0.44
SF3B4-201ENST00000271628 OR51G1Q8NGK1 321 aa12.31□□□□□ -0.44
SF3B4-201ENST00000271628 CACNG8Q8WXS5 425 aa12.31□□□□□ -0.44
SF3B4-201ENST00000271628 MGST2Q99735 147 aa12.31□□□□□ -0.44
SF3B4-201ENST00000271628 GPR61Q9BZJ8 451 aa12.31□□□□□ -0.44
SF3B4-201ENST00000271628 CACNA1BQ00975 2339 aa12.31□□□□□ -0.44
SF3B4-201ENST00000271628 USP24Q9UPU5 2620 aa12.31□□□□□ -0.44
SF3B4-201ENST00000271628 A0A1W2PPI3 338 aa12.31□□□□□ -0.44
SF3B4-201ENST00000271628 ODF3BA8MYP8 253 aa12.31□□□□□ -0.44
SF3B4-201ENST00000271628 H7BYZ3 331 aa12.31□□□□□ -0.44
SF3B4-201ENST00000271628 CRYGBP07316 175 aa12.31□□□□□ -0.44
SF3B4-201ENST00000271628 CDC34P49427 236 aaPredicted RBP12.31□□□□□ -0.44
SF3B4-201ENST00000271628 PSG5Q15238 335 aa12.31□□□□□ -0.44
SF3B4-201ENST00000271628 GGTLC1Q9BX51 225 aa12.31□□□□□ -0.44
SF3B4-201ENST00000271628 BPESC1Q9GZL8 116 aa12.31□□□□□ -0.44
SF3B4-201ENST00000271628 SIGLEC9Q9Y336 463 aa12.31□□□□□ -0.44
SF3B4-201ENST00000271628 E7EUB6 86 aa12.3□□□□□ -0.44
SF3B4-201ENST00000271628 ZFP36P26651 326 aaKnown RBP12.3□□□□□ -0.44
SF3B4-201ENST00000271628 GPX4P36969 197 aaPredicted RBP12.3□□□□□ -0.44
SF3B4-201ENST00000271628 GALR1P47211 349 aa12.3□□□□□ -0.44
SF3B4-201ENST00000271628 PDLIM4P50479 330 aa12.3□□□□□ -0.44
SF3B4-201ENST00000271628 PRSS8Q16651 343 aa12.3□□□□□ -0.44
SF3B4-201ENST00000271628 TMEM144Q7Z5S9 345 aa12.3□□□□□ -0.44
SF3B4-201ENST00000271628 PPP1R27Q86WC6 154 aa12.3□□□□□ -0.44
SF3B4-201ENST00000271628 IGFBPL1Q8WX77 278 aa12.3□□□□□ -0.44
SF3B4-201ENST00000271628 PXMP4Q9Y6I8 212 aa12.3□□□□□ -0.44
SF3B4-201ENST00000271628 A0A1W2PPV4 95 aa12.3□□□□□ -0.44
SF3B4-201ENST00000271628 PDE6DO43924 150 aa12.3□□□□□ -0.44
SF3B4-201ENST00000271628 PAGE4O60829 102 aa12.3□□□□□ -0.44
SF3B4-201ENST00000271628 RPL29P47914 159 aaKnown RBP12.3□□□□□ -0.44
SF3B4-201ENST00000271628 CD69Q07108 199 aa12.3□□□□□ -0.44
SF3B4-201ENST00000271628 GFI1BQ5VTD9 330 aa12.3□□□□□ -0.44
SF3B4-201ENST00000271628 VMO1Q7Z5L0 202 aa12.3□□□□□ -0.44
SF3B4-201ENST00000271628 RNASEH2CQ8TDP1 164 aaKnown RBP12.3□□□□□ -0.44
SF3B4-201ENST00000271628 PFDN5Q99471 154 aa12.3□□□□□ -0.44
SF3B4-201ENST00000271628 CGB1A6NKQ9 187 aa12.29□□□□□ -0.44
SF3B4-201ENST00000271628 PPP5D1E7EU14 171 aa12.29□□□□□ -0.44
SF3B4-201ENST00000271628 HIST1H1BP16401 226 aaKnown RBP12.29□□□□□ -0.44
SF3B4-201ENST00000271628 WT1-ASQ06250 92 aa12.29□□□□□ -0.44
SF3B4-201ENST00000271628 MRGPRG-AS1Q2M3A8 158 aa12.29□□□□□ -0.44
SF3B4-201ENST00000271628 HCP5Q6MZN7 132 aa12.29□□□□□ -0.44
SF3B4-201ENST00000271628 CCDC144NLQ6NUI1 221 aa12.29□□□□□ -0.44
SF3B4-201ENST00000271628 OR4X1Q8NH49 305 aa12.29□□□□□ -0.44
SF3B4-201ENST00000271628 C1orf159Q96HA4 380 aa12.29□□□□□ -0.44
SF3B4-201ENST00000271628 CCL19Q99731 98 aa12.29□□□□□ -0.44
SF3B4-201ENST00000271628 IGHV2-70DA0A0C4DH43 119 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 OOSP1A8MZH6 123 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 C11orf94C9JXX5 98 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 IGHV4-39P01824 125 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 FAM3BP58499 235 aaPredicted RBP12.28□□□□□ -0.44
SF3B4-201ENST00000271628 LMO4P61968 165 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 PAX2Q02962 417 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 MINOS1Q5TGZ0 78 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 BBC3Q96PG8 261 aaPredicted RBP12.28□□□□□ -0.44
SF3B4-201ENST00000271628 TXNDC17Q9BRA2 123 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 TPSG1Q9NRR2 321 aa12.28□□□□□ -0.44
SF3B4-201ENST00000271628 MINOS1-NBL1R4GNA1 71 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms