RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 H7C2G1 150 aa16.04■□□□□ 0.16
UPF1-201ENST00000262803 GREB1Q4ZG55 1949 aa16.04■□□□□ 0.16
UPF1-201ENST00000262803 C7orf71A4D174 169 aa16.04■□□□□ 0.16
UPF1-201ENST00000262803 SRP19P09132 144 aaKnown RBP16.04■□□□□ 0.16
UPF1-201ENST00000262803 HOXA5P20719 270 aa16.04■□□□□ 0.16
UPF1-201ENST00000262803 ATRAIDQ6UW56 229 aa16.04■□□□□ 0.16
UPF1-201ENST00000262803 C9JCJ5 164 aa16.04■□□□□ 0.16
UPF1-201ENST00000262803 STHQ8IWL8 128 aa16.04■□□□□ 0.16
UPF1-201ENST00000262803 CCL1P22362 96 aa16.04■□□□□ 0.16
UPF1-201ENST00000262803 OR13C6PQ8NH95 151 aa16.04■□□□□ 0.16
UPF1-201ENST00000262803 DMRT1Q9Y5R6 373 aa16.04■□□□□ 0.16
UPF1-201ENST00000262803 WDR90Q96KV7 1748 aa16.03■□□□□ 0.16
UPF1-201ENST00000262803 TRBV6-7A0A0A0MS04 114 aa16.03■□□□□ 0.16
UPF1-201ENST00000262803 GAS1P54826 345 aa16.03■□□□□ 0.16
UPF1-201ENST00000262803 SRSF7Q16629 238 aaKnown RBP eCLIP16.03■□□□□ 0.16
UPF1-201ENST00000262803 PLP1P60201 277 aa16.03■□□□□ 0.16
UPF1-201ENST00000262803 LY6G6FQ5SQ64 297 aa16.03■□□□□ 0.16
UPF1-201ENST00000262803 SLC25A28Q96A46 364 aa16.03■□□□□ 0.16
UPF1-201ENST00000262803 WNT10AQ9GZT5 417 aa16.03■□□□□ 0.16
UPF1-201ENST00000262803 CLEC19AQ6UXS0 136 aa16.03■□□□□ 0.16
UPF1-201ENST00000262803 BIVMQ86UB2 503 aa16.03■□□□□ 0.16
UPF1-201ENST00000262803 IGKV1-9A0A0C4DH69 117 aa16.03■□□□□ 0.16
UPF1-201ENST00000262803 CBLN1P23435 193 aa16.03■□□□□ 0.16
UPF1-201ENST00000262803 RNF5Q99942 180 aa16.03■□□□□ 0.16
UPF1-201ENST00000262803 RNF126Q9BV68 326 aa16.03■□□□□ 0.16
UPF1-201ENST00000262803 A1L4Q6 167 aa16.02■□□□□ 0.16
UPF1-201ENST00000262803 JKAMPQ9P055 326 aa16.02■□□□□ 0.16
UPF1-201ENST00000262803 NYNRINQ9P2P1 1898 aaKnown RBP16.02■□□□□ 0.16
UPF1-201ENST00000262803 TRGV2A0A075B6R0 118 aa16.02■□□□□ 0.16
UPF1-201ENST00000262803 NTN3O00634 580 aaPredicted RBP16.02■□□□□ 0.16
UPF1-201ENST00000262803 DTX1Q86Y01 620 aa16.02■□□□□ 0.16
UPF1-201ENST00000262803 TFF3Q07654 80 aa16.02■□□□□ 0.15
UPF1-201ENST00000262803 FER1L6-AS1Q8NA97 138 aa16.02■□□□□ 0.15
UPF1-201ENST00000262803 WNT2P09544 360 aa16.02■□□□□ 0.15
UPF1-201ENST00000262803 OTX1P32242 354 aaPredicted RBP16.02■□□□□ 0.15
UPF1-201ENST00000262803 SCGB3A1Q96QR1 104 aa16.01■□□□□ 0.15
UPF1-201ENST00000262803 EP300Q09472 2414 aaPredicted RBP16.01■□□□□ 0.15
UPF1-201ENST00000262803 HEATR5BQ9P2D3 2071 aa16.01■□□□□ 0.15
UPF1-201ENST00000262803 TTC9CQ8N5M4 171 aa16.01■□□□□ 0.15
UPF1-201ENST00000262803 VCX2Q9H322 139 aa16.01■□□□□ 0.15
UPF1-201ENST00000262803 C15orf61A6NNL5 157 aa16.01■□□□□ 0.15
UPF1-201ENST00000262803 OVOL1O14753 267 aa16.01■□□□□ 0.15
UPF1-201ENST00000262803 CNTFRP26992 372 aa16.01■□□□□ 0.15
UPF1-201ENST00000262803 LDLRAD2Q5SZI1 272 aa16.01■□□□□ 0.15
UPF1-201ENST00000262803 SMIM13P0DJ93 91 aa16.01■□□□□ 0.15
UPF1-201ENST00000262803 IGFBP2P18065 325 aa16.01■□□□□ 0.15
UPF1-201ENST00000262803 GTSCR1Q86UQ5 136 aa16.01■□□□□ 0.15
UPF1-201ENST00000262803 C8orf46Q8TAG6 207 aa16.01■□□□□ 0.15
UPF1-201ENST00000262803 FABP5P3A8MUU1 101 aa16■□□□□ 0.15
UPF1-201ENST00000262803 TMEM170BQ5T4T1 132 aa16■□□□□ 0.15
UPF1-201ENST00000262803 NUDT11Q96G61 164 aa16■□□□□ 0.15
UPF1-201ENST00000262803 GFI1Q99684 422 aa16■□□□□ 0.15
UPF1-201ENST00000262803 DOCK4Q8N1I0 1966 aa16■□□□□ 0.15
UPF1-201ENST00000262803 TRAV21A0A0B4J279 112 aa16■□□□□ 0.15
UPF1-201ENST00000262803 FAM201AQ5SY85 155 aa16■□□□□ 0.15
UPF1-201ENST00000262803 DICER1Q9UPY3 1922 aaKnown RBP16■□□□□ 0.15
UPF1-201ENST00000262803 SPACA3Q8IXA5 215 aa16■□□□□ 0.15
UPF1-201ENST00000262803 M0R381 172 aa16■□□□□ 0.15
UPF1-201ENST00000262803 MINOS1Q5TGZ0 78 aa15.99■□□□□ 0.15
UPF1-201ENST00000262803 WBP1Q96G27 269 aa15.99■□□□□ 0.15
UPF1-201ENST00000262803 MINOS1-NBL1R4GNA1 71 aa15.99■□□□□ 0.15
UPF1-201ENST00000262803 IGKV3OR2-268A0A0C4DH90 116 aa15.99■□□□□ 0.15
UPF1-201ENST00000262803 CGAP01215 116 aa15.99■□□□□ 0.15
UPF1-201ENST00000262803 OR9G9P0C7N8 305 aa15.99■□□□□ 0.15
UPF1-201ENST00000262803 ORMDL3Q8N138 153 aa15.99■□□□□ 0.15
UPF1-201ENST00000262803 PAQR4Q8N4S7 273 aaPredicted RBP15.99■□□□□ 0.15
UPF1-201ENST00000262803 ZNF319Q9P2F9 582 aa15.99■□□□□ 0.15
UPF1-201ENST00000262803 ZNF257Q9Y2Q1 563 aa15.99■□□□□ 0.15
UPF1-201ENST00000262803 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.99■□□□□ 0.15
UPF1-201ENST00000262803 IGKV3-20P01619 116 aa15.99■□□□□ 0.15
UPF1-201ENST00000262803 SAA1P0DJI8 122 aaPredicted RBP15.99■□□□□ 0.15
UPF1-201ENST00000262803 LINC01559Q495D7 138 aa15.99■□□□□ 0.15
UPF1-201ENST00000262803 GCSAMLQ5JQS6 135 aa15.99■□□□□ 0.15
UPF1-201ENST00000262803 ZNF525Q8N782 197 aa15.99■□□□□ 0.15
UPF1-201ENST00000262803 LYZL4Q96KX0 146 aa15.99■□□□□ 0.15
UPF1-201ENST00000262803 Q9H3A6 140 aa15.99■□□□□ 0.15
UPF1-201ENST00000262803 LOC285556D6RIA3 1793 aa15.99■□□□□ 0.15
UPF1-201ENST00000262803 RALGAPA1Q6GYQ0 2036 aa15.99■□□□□ 0.15
UPF1-201ENST00000262803 IZUMO1RA6ND01 250 aa15.98■□□□□ 0.15
UPF1-201ENST00000262803 EFNA4P52798 201 aa15.98■□□□□ 0.15
UPF1-201ENST00000262803 ZNF497Q6ZNH5 498 aa15.98■□□□□ 0.15
UPF1-201ENST00000262803 KLK15Q9H2R5 256 aa15.98■□□□□ 0.15
UPF1-201ENST00000262803 PPBPP02775 128 aa15.98■□□□□ 0.15
UPF1-201ENST00000262803 H0YIZ8 118 aa15.98■□□□□ 0.15
UPF1-201ENST00000262803 A0A087WWC5 75 aa15.98■□□□□ 0.15
UPF1-201ENST00000262803 IGHV3-35A0A0C4DH35 117 aa15.98■□□□□ 0.15
UPF1-201ENST00000262803 TMEM8BA6NDV4 472 aa15.98■□□□□ 0.15
UPF1-201ENST00000262803 RNASE1P07998 156 aaKnown RBP15.98■□□□□ 0.15
UPF1-201ENST00000262803 FAM89BQ8N5H3 189 aa15.98■□□□□ 0.15
UPF1-201ENST00000262803 IGKV1D-13A0A0B4J2D9 117 aa15.98■□□□□ 0.15
UPF1-201ENST00000262803 TCRBV4S1A1TA0A5B7 111 aa15.98■□□□□ 0.15
UPF1-201ENST00000262803 PSMB11A5LHX3 300 aa15.98■□□□□ 0.15
UPF1-201ENST00000262803 C1QTNF9BB2RNN3 333 aa15.98■□□□□ 0.15
UPF1-201ENST00000262803 IGKV1-13P0DP09 117 aa15.98■□□□□ 0.15
UPF1-201ENST00000262803 ATOH7Q8N100 152 aa15.98■□□□□ 0.15
UPF1-201ENST00000262803 PLPPR1Q8TBJ4 325 aa15.97■□□□□ 0.15
UPF1-201ENST00000262803 SAA2-SAA4A0A096LPE2 208 aa15.97■□□□□ 0.15
UPF1-201ENST00000262803 SAA2P0DJI9 122 aaPredicted RBP15.97■□□□□ 0.15
UPF1-201ENST00000262803 CELA3BP08861 270 aa15.97■□□□□ 0.15
UPF1-201ENST00000262803 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms