RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 A8MZ25 164 aa17.3■□□□□ 0.36
LSM4-201ENST00000252816 MT-CO2P00403 227 aa17.3■□□□□ 0.36
LSM4-201ENST00000252816 IGHV3-48P01763 117 aa17.3■□□□□ 0.36
LSM4-201ENST00000252816 TMEM268Q5VZI3 342 aa17.3■□□□□ 0.36
LSM4-201ENST00000252816 GTSCR1Q86UQ5 136 aa17.3■□□□□ 0.36
LSM4-201ENST00000252816 FAM219AQ8IW50 185 aa17.3■□□□□ 0.36
LSM4-201ENST00000252816 TOMM5Q8N4H5 51 aa17.3■□□□□ 0.36
LSM4-201ENST00000252816 TMEM190Q8WZ59 177 aa17.3■□□□□ 0.36
LSM4-201ENST00000252816 GPR146Q96CH1 333 aa17.3■□□□□ 0.36
LSM4-201ENST00000252816 WDR89Q96FK6 387 aaPredicted RBP17.3■□□□□ 0.36
LSM4-201ENST00000252816 ZNF414Q96IQ9 312 aa17.3■□□□□ 0.36
LSM4-201ENST00000252816 SCGB3A2Q96PL1 93 aa17.3■□□□□ 0.36
LSM4-201ENST00000252816 PALMDQ9NP74 551 aa17.3■□□□□ 0.36
LSM4-201ENST00000252816 PRR13Q9NZ81 148 aa17.3■□□□□ 0.36
LSM4-201ENST00000252816 TMEM56-RWDD3S4R434 201 aa17.3■□□□□ 0.36
LSM4-201ENST00000252816 CTSGP08311 255 aa17.29■□□□□ 0.36
LSM4-201ENST00000252816 C8orf88P0DMB2 117 aa17.29■□□□□ 0.36
LSM4-201ENST00000252816 SUPT4H1P63272 117 aaKnown RBP17.29■□□□□ 0.36
LSM4-201ENST00000252816 TMEM187Q14656 261 aa17.29■□□□□ 0.36
LSM4-201ENST00000252816 AARDQ4LEZ3 155 aa17.29■□□□□ 0.36
LSM4-201ENST00000252816 PINX1Q96BK5 328 aaKnown RBP17.29■□□□□ 0.36
LSM4-201ENST00000252816 GALNT14Q96FL9 552 aa17.29■□□□□ 0.36
LSM4-201ENST00000252816 PDCD10Q9BUL8 212 aa17.29■□□□□ 0.36
LSM4-201ENST00000252816 UFC1Q9Y3C8 167 aa17.29■□□□□ 0.36
LSM4-201ENST00000252816 FAUP35544 74 aaKnown RBP17.28■□□□□ 0.36
LSM4-201ENST00000252816 HOXA1P49639 335 aaPredicted RBP17.28■□□□□ 0.36
LSM4-201ENST00000252816 ELLP55199 621 aaPredicted RBP17.28■□□□□ 0.36
LSM4-201ENST00000252816 AP3S2P59780 193 aa17.28■□□□□ 0.36
LSM4-201ENST00000252816 GUCA2BQ16661 112 aa17.28■□□□□ 0.36
LSM4-201ENST00000252816 ZNF57Q68EA5 555 aaPredicted RBP17.28■□□□□ 0.36
LSM4-201ENST00000252816 BTNL8Q6UX41 500 aa17.28■□□□□ 0.36
LSM4-201ENST00000252816 TMEM61Q8N0U2 210 aa17.28■□□□□ 0.36
LSM4-201ENST00000252816 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.28■□□□□ 0.36
LSM4-201ENST00000252816 CACNG5Q9UF02 275 aa17.28■□□□□ 0.36
LSM4-201ENST00000252816 KCNIP3Q9Y2W7 256 aa17.28■□□□□ 0.36
LSM4-201ENST00000252816 TENM3Q9P273 2699 aa17.28■□□□□ 0.36
LSM4-201ENST00000252816 IGHV3OR16-8A0A075B7F1 116 aa17.27■□□□□ 0.36
LSM4-201ENST00000252816 NDUFA4O00483 81 aa17.27■□□□□ 0.36
LSM4-201ENST00000252816 CD7P09564 240 aa17.27■□□□□ 0.36
LSM4-201ENST00000252816 RNASE2P10153 161 aaKnown RBP17.27■□□□□ 0.36
LSM4-201ENST00000252816 AKR1C4P17516 323 aa17.27■□□□□ 0.36
LSM4-201ENST00000252816 FCGR2BP31994 310 aaPredicted RBP17.27■□□□□ 0.36
LSM4-201ENST00000252816 SNCAP37840 140 aa17.27■□□□□ 0.36
LSM4-201ENST00000252816 MFAP4P55083 255 aa17.27■□□□□ 0.36
LSM4-201ENST00000252816 CD81P60033 236 aa17.27■□□□□ 0.36
LSM4-201ENST00000252816 SPANXN2Q5MJ10 180 aa17.27■□□□□ 0.36
LSM4-201ENST00000252816 PVRIGQ6DKI7 326 aa17.27■□□□□ 0.36
LSM4-201ENST00000252816 MARC2Q969Z3 335 aa17.27■□□□□ 0.36
LSM4-201ENST00000252816 WWC2-AS2Q96NR7 200 aa17.27■□□□□ 0.36
LSM4-201ENST00000252816 SRRQ9GZT4 340 aa17.27■□□□□ 0.36
LSM4-201ENST00000252816 MRPL27Q9P0M9 148 aaKnown RBP17.27■□□□□ 0.36
LSM4-201ENST00000252816 SPCS3P61009 180 aa17.26■□□□□ 0.35
LSM4-201ENST00000252816 TXN2Q99757 166 aa17.26■□□□□ 0.35
LSM4-201ENST00000252816 NEURL2Q9BR09 285 aa17.26■□□□□ 0.35
LSM4-201ENST00000252816 OR52E5Q8NH55 327 aa17.25■□□□□ 0.35
LSM4-201ENST00000252816 IL22RA2Q969J5 263 aa17.25■□□□□ 0.35
LSM4-201ENST00000252816 C20orf24Q9BUV8 137 aa17.25■□□□□ 0.35
LSM4-201ENST00000252816 ENY2Q9NPA8 101 aa17.25■□□□□ 0.35
LSM4-201ENST00000252816 DAZ1Q9NQZ3 744 aaKnown RBP17.25■□□□□ 0.35
LSM4-201ENST00000252816 GAR1Q9NY12 217 aaKnown RBP17.25■□□□□ 0.35
LSM4-201ENST00000252816 NUPL2O15504 423 aaKnown RBP17.24■□□□□ 0.35
LSM4-201ENST00000252816 ZNF207O43670 478 aaKnown RBP17.24■□□□□ 0.35
LSM4-201ENST00000252816 SCAF4O95104 1147 aaKnown RBP17.24■□□□□ 0.35
LSM4-201ENST00000252816 BSXQ3C1V8 233 aa17.24■□□□□ 0.35
LSM4-201ENST00000252816 WFDC10AQ9H1F0 79 aa17.24■□□□□ 0.35
LSM4-201ENST00000252816 TUBA4BQ9H853 241 aa17.24■□□□□ 0.35
LSM4-201ENST00000252816 SUB1P53999 127 aaKnown RBP eCLIP17.23■□□□□ 0.355e-12■■■■■ 99.5
LSM4-201ENST00000252816 LYZL2Q7Z4W2 148 aa17.23■□□□□ 0.35
LSM4-201ENST00000252816 TMED4Q7Z7H5 227 aa17.23■□□□□ 0.35
LSM4-201ENST00000252816 DEDD2Q8WXF8 326 aa17.23■□□□□ 0.35
LSM4-201ENST00000252816 RCHY1Q96PM5 261 aa17.23■□□□□ 0.35
LSM4-201ENST00000252816 TM2D3Q9BRN9 247 aa17.23■□□□□ 0.35
LSM4-201ENST00000252816 K7EMT4 169 aa17.22■□□□□ 0.35
LSM4-201ENST00000252816 RELQ04864 619 aaPredicted RBP17.22■□□□□ 0.35
LSM4-201ENST00000252816 BAK1Q16611 211 aa17.22■□□□□ 0.35
LSM4-201ENST00000252816 NMSQ5H8A3 153 aa17.22■□□□□ 0.35
LSM4-201ENST00000252816 DEFB125Q8N687 156 aa17.22■□□□□ 0.35
LSM4-201ENST00000252816 FNDC4Q9H6D8 234 aaPredicted RBP17.22■□□□□ 0.35
LSM4-201ENST00000252816 MRPL36Q9P0J6 103 aaKnown RBP17.22■□□□□ 0.35
LSM4-201ENST00000252816 A0A0B4J2A0 478 aa17.21■□□□□ 0.35
LSM4-201ENST00000252816 C15orf62A8K5M9 175 aa17.21■□□□□ 0.35
LSM4-201ENST00000252816 GNG7O60262 68 aa17.21■□□□□ 0.35
LSM4-201ENST00000252816 NXPH3O95157 252 aa17.21■□□□□ 0.35
LSM4-201ENST00000252816 SULT1A3P0DMM9 295 aa17.21■□□□□ 0.35
LSM4-201ENST00000252816 SULT1A4P0DMN0 295 aa17.21■□□□□ 0.35
LSM4-201ENST00000252816 MLANAQ16655 118 aa17.21■□□□□ 0.35
LSM4-201ENST00000252816 HAGHQ16775 308 aa17.21■□□□□ 0.35
LSM4-201ENST00000252816 DUSP18Q8NEJ0 188 aa17.21■□□□□ 0.35
LSM4-201ENST00000252816 SDHCQ99643 169 aaPredicted RBP17.21■□□□□ 0.35
LSM4-201ENST00000252816 SLC25A21Q9BQT8 299 aaPredicted RBP17.21■□□□□ 0.35
LSM4-201ENST00000252816 SHPKQ9UHJ6 478 aa17.21■□□□□ 0.35
LSM4-201ENST00000252816 TRAV25A0A0B4J276 109 aa17.2■□□□□ 0.34
LSM4-201ENST00000252816 OR11H12B2RN74 326 aa17.2■□□□□ 0.34
LSM4-201ENST00000252816 CORTO00230 105 aa17.2■□□□□ 0.34
LSM4-201ENST00000252816 ANXA3P12429 323 aa17.2■□□□□ 0.34
LSM4-201ENST00000252816 TMEM128Q5BJH2 165 aa17.2■□□□□ 0.34
LSM4-201ENST00000252816 LGI3Q8N145 548 aa17.2■□□□□ 0.34
LSM4-201ENST00000252816 ZMAT4Q9H898 229 aa17.2■□□□□ 0.34
LSM4-201ENST00000252816 HEYLQ9NQ87 328 aaPredicted RBP17.2■□□□□ 0.34
LSM4-201ENST00000252816 NDUFA13Q9P0J0 144 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms