RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 DIP2AQ14689 1571 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 F8W1H4 67 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 TMEM250H0YL14 139 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 MORN3Q6PF18 240 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-221ENST00000641996 FBXL14Q8N1E6 418 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 VSIRQ9H7M9 311 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 COL5A2P05997 1499 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-221ENST00000641996 TRBV20OR9-2A0A075B6H5 130 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 SPEM2Q0P670 501 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 MORN2Q502X0 79 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 NPWQ8N729 165 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 COQ2Q96H96 371 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 CDC42BPBQ9Y5S2 1711 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 TMED7-TICAM2A0A0A6YYA0 188 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-221ENST00000641996 A0A0B4J2E0 115 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 A0A1B0GX12 115 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 GRNP28799 593 aaKnown RBP2.99□□□□□ -1.93
SCN1A-221ENST00000641996 FUSP35637 526 aaKnown RBP eCLIP2.99□□□□□ -1.93
SCN1A-221ENST00000641996 KDM4DQ6B0I6 523 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 ANKRD37Q7Z713 158 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 TMEM256Q8N2U0 113 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 MCHR1Q99705 422 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 A0A1B0GX78 115 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 LGALS2P05162 132 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 RPS4Y1P22090 263 aaKnown RBP2.99□□□□□ -1.93
SCN1A-221ENST00000641996 S100A3P33764 101 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 LCN8Q6JVE9 175 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 C2orf48Q96LS8 159 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 C21orf62Q9NYP8 219 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 SPHKAPQ2M3C7 1700 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 NCBP2LA6PVI3 153 aaKnown RBP2.99□□□□□ -1.93
SCN1A-221ENST00000641996 H3BRM9 83 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 CSN3P07498 182 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 Q6ZT83 130 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 FAM3DQ96BQ1 224 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 BMFQ96LC9 184 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 GPHA2Q96T91 129 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 SIGLEC9Q9Y336 463 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 CRYBB2P43320 205 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 SNRPFP62306 86 aaKnown RBP2.99□□□□□ -1.93
SCN1A-221ENST00000641996 DNM1P46Q6ZS02 220 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 Q6ZWC4 215 aa2.99□□□□□ -1.93
SCN1A-221ENST00000641996 APOBEC4Q8WW27 367 aaKnown RBP2.99□□□□□ -1.93
SCN1A-221ENST00000641996 C12orf77C9JDV5 145 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 CA7P43166 264 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF138P52744 262 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 SPTSSAQ969W0 71 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 C1orf159Q96HA4 380 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 RALGAPBQ86X10 1494 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 SOCS1O15524 211 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 CST7O76096 145 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 C1orf105O95561 183 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 REG3AQ06141 175 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 MORN5Q5VZ52 161 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 C1QL2Q7Z5L3 287 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 ABRACLQ9P1F3 81 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 IGLV3-22A0A075B6J6 115 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 A0A087WX48 190 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 TRAV26-2A0A0B4J265 109 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 C4orf51C9J302 202 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 PRB1P04280 392 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF750Q32MQ0 723 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 TRPT1Q86TN4 253 aaKnown RBP2.98□□□□□ -1.93
SCN1A-221ENST00000641996 RNF115Q9Y4L5 304 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 RBBP6Q7Z6E9 1792 aaKnown RBP2.98□□□□□ -1.93
SCN1A-221ENST00000641996 IGHA1P01876 353 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 TMEM187Q14656 261 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 ZNF79Q15937 498 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 DTX1Q86Y01 620 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 MS4A6EQ96DS6 147 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 ATOH8Q96SQ7 321 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 R3HDMLQ9H3Y0 253 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 LINC00527Q9UJ94 153 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 GRIN2AQ12879 1464 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 TYROBPO43914 113 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 HLA-DRB4P13762 266 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 DAPP51397 102 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 LIM2P55344 173 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 MIC13Q5XKP0 118 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 EBLN2Q6P2I7 272 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 TMEM92Q6UXU6 159 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 FGF14Q92915 247 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 TM2D2Q9BX73 214 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 HLA-DRB4X5D2U9 266 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 SMKR1H3BMG3 65 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 HLA-DOAP06340 250 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 FAM90A1Q86YD7 464 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 OR9G1Q8NH87 305 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 SSC4DQ8WTU2 575 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 GNB1LQ9BYB4 327 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 DLL3Q9NYJ7 618 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 MADDQ8WXG6 1647 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 EIF2AK4Q9P2K8 1649 aaKnown RBP2.98□□□□□ -1.93
SCN1A-221ENST00000641996 OBSL1O75147 1896 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 LOC285556D6RIA3 1793 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 ABCC6O95255 1503 aa2.98□□□□□ -1.93
SCN1A-221ENST00000641996 ANKRD11Q6UB99 2663 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-221ENST00000641996 DUSP14O95147 198 aaKnown RBP2.98□□□□□ -1.93
SCN1A-221ENST00000641996 RNASE2P10153 161 aaKnown RBP2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms