RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 FAM3BP58499 235 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-218ENST00000640036 PRSS8Q16651 343 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 BCDIN3DQ7Z5W3 292 aaKnown RBP4.22□□□□□ -1.73
SCN1A-218ENST00000640036 LSM10Q969L4 123 aaKnown RBP4.22□□□□□ -1.73
SCN1A-218ENST00000640036 ABHD1Q96SE0 405 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 AICDAQ9GZX7 198 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 MS4A6AQ9H2W1 248 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 NXT2Q9NPJ8 142 aaKnown RBP4.22□□□□□ -1.73
SCN1A-218ENST00000640036 RPUSD1Q9UJJ7 312 aaKnown RBP4.22□□□□□ -1.73
SCN1A-218ENST00000640036 NEU3Q9UQ49 428 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 DPRXA6NFQ7 191 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 ZAR1LA6NP61 321 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 OVOL1O14753 267 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 CTAG2O75638 210 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 NDUFB8O95169 186 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 ANOS1P23352 680 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 SLC6A1P30531 599 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 MAS1LP35410 378 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 ZNF585BQ52M93 769 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 C2orf50Q96LR7 162 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 SLC25A37Q9NYZ2 338 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 INAFM1C9JVW0 142 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 RPL36A-HNRNPH2H7BZ11 118 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 LHBP01229 141 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 ALPLP05186 524 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 RPL32P62910 135 aaKnown RBP4.22□□□□□ -1.73
SCN1A-218ENST00000640036 TMEM128Q5BJH2 165 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 LRRC75A-AS1Q8N1F1 130 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 ADAT3Q96EY9 351 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-218ENST00000640036 PRADC1Q9BSG0 188 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 TANC2Q9HCD6 1990 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 CXorf1O96002 111 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 IGKV1D-16P01601 117 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 IGHA2P01877 340 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 FCGR3AP08637 254 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 EFNB2P52799 333 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 DAZAP2Q15038 168 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-218ENST00000640036 SPINK9Q5DT21 86 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 FAM103A1Q9BTL3 118 aaKnown RBP4.22□□□□□ -1.73
SCN1A-218ENST00000640036 PSORS1C1Q9UIG5 152 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 PTPRDP23468 1912 aa4.22□□□□□ -1.73
SCN1A-218ENST00000640036 PLPP2O43688 288 aa4.21□□□□□ -1.73
SCN1A-218ENST00000640036 CA2P00918 260 aa4.21□□□□□ -1.73
SCN1A-218ENST00000640036 SAA4P35542 130 aa4.21□□□□□ -1.73
SCN1A-218ENST00000640036 RBM11P57052 281 aaKnown RBP4.21□□□□□ -1.73
SCN1A-218ENST00000640036 FAM201AQ5SY85 155 aa4.21□□□□□ -1.73
SCN1A-218ENST00000640036 GLDNQ6ZMI3 551 aaPredicted RBP4.21□□□□□ -1.73
SCN1A-218ENST00000640036 F8WEM9 126 aa4.21□□□□□ -1.73
SCN1A-218ENST00000640036 LY6HO94772 140 aa4.21□□□□□ -1.73
SCN1A-218ENST00000640036 LINC00271P0C7V0 271 aa4.21□□□□□ -1.73
SCN1A-218ENST00000640036 EML5Q05BV3 1969 aa4.21□□□□□ -1.73
SCN1A-218ENST00000640036 TRAV39A0A0B4J263 110 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 A0A1B0GW15 77 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 C1QBP02746 253 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 PDGFAP04085 211 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 ASAH2BP0C7U1 165 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 CNTFRP26992 372 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 DGCR2P98153 550 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 PSG9Q00887 426 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 KIAA0040Q15053 153 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 PIGYQ3MUY2 71 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 HIST1H4GQ99525 98 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 MAP1LC3AQ9H492 121 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 AKIP1Q9NQ31 210 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 SMAD5-AS1Q9Y6J3 95 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 TRAV14DV4A0A0A6YYC5 116 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 C3orf85A0A1B0GTC6 90 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 NAPSAO96009 420 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 LGALS1P09382 135 aaKnown RBP4.21□□□□□ -1.74
SCN1A-218ENST00000640036 DAD1P61803 113 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 C15orf53Q8NAA6 179 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 OR10AG1Q8NH19 301 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 OSR1Q8TAX0 266 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-218ENST00000640036 CTHRC1Q96CG8 243 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 EPG5Q9HCE0 2579 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 TRAV8-6A0A0B4J262 113 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 RHOGP84095 191 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 RNF144BQ7Z419 303 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 RIMKLAQ8IXN7 391 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 HCFC1P51610 2035 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 LOC107984156A0A0G2JMH3 177 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 PINLYPA6NC86 204 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 MAP1LC3B2A6NCE7 125 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 GCM2O75603 506 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-218ENST00000640036 IL11P20809 199 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 TMEM258P61165 79 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 ZNF474Q6S9Z5 364 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-218ENST00000640036 ARL17AQ8IVW1 177 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 MAP1LC3BQ9GZQ8 125 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 INAFM2P0DMQ5 153 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 SLC38A11Q08AI6 406 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 ZNF329Q86UD4 541 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 TNFRSF12AQ9NP84 129 aa4.21□□□□□ -1.74
SCN1A-218ENST00000640036 IGHV3-49A0A0A0MS15 119 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 ALX3O95076 343 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 PLAUP00749 431 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 IGHA1P01876 353 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 ZNF660Q6AZW8 331 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-218ENST00000640036 LINC00469Q8N7U9 141 aa4.2□□□□□ -1.74
SCN1A-218ENST00000640036 LEAP2Q969E1 77 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms