RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 TMEM56Q96MV1 263 aa13.7□□□□□ -0.22
CLN6-220ENST00000637450 C20orf24Q9BUV8 137 aa13.7□□□□□ -0.22
CLN6-220ENST00000637450 TMEM14BQ9NUH8 114 aa13.7□□□□□ -0.22
CLN6-220ENST00000637450 FKBP11Q9NYL4 201 aa13.7□□□□□ -0.22
CLN6-220ENST00000637450 IGHV3OR16-8A0A075B7F1 116 aa13.69□□□□□ -0.22
CLN6-220ENST00000637450 A0A0J9YWU9 116 aa13.69□□□□□ -0.22
CLN6-220ENST00000637450 DBX1A6NMT0 343 aa13.69□□□□□ -0.22
CLN6-220ENST00000637450 UBE2CO00762 179 aa13.69□□□□□ -0.22
CLN6-220ENST00000637450 SPRY2O43597 315 aa13.69□□□□□ -0.22
CLN6-220ENST00000637450 CTSGP08311 255 aa13.69□□□□□ -0.22
CLN6-220ENST00000637450 HLA-DMAP28067 261 aa13.69□□□□□ -0.22
CLN6-220ENST00000637450 BMI1P35226 326 aa13.69□□□□□ -0.22
CLN6-220ENST00000637450 HRH1P35367 487 aa13.69□□□□□ -0.22
CLN6-220ENST00000637450 TNFRSF9Q07011 255 aa13.69□□□□□ -0.22
CLN6-220ENST00000637450 UBAC2Q8NBM4 344 aa13.69□□□□□ -0.22
CLN6-220ENST00000637450 OR1P1Q8NH06 330 aa13.69□□□□□ -0.22
CLN6-220ENST00000637450 TSC22D3Q99576 134 aa13.69□□□□□ -0.22
CLN6-220ENST00000637450 FAM212BQ9NTI7 297 aaPredicted RBP13.69□□□□□ -0.22
CLN6-220ENST00000637450 KIR2DL5BA0A0G2JN68 375 aa13.68□□□□□ -0.22
CLN6-220ENST00000637450 KIR2DL5BA0A0G2JPC4 375 aa13.68□□□□□ -0.22
CLN6-220ENST00000637450 C15orf61A6NNL5 157 aa13.68□□□□□ -0.22
CLN6-220ENST00000637450 C15orf62A8K5M9 175 aa13.68□□□□□ -0.22
CLN6-220ENST00000637450 ZNF207O43670 478 aaKnown RBP13.68□□□□□ -0.22
CLN6-220ENST00000637450 LSM3P62310 102 aaKnown RBP13.68□□□□□ -0.22
CLN6-220ENST00000637450 EWSR1Q01844 656 aaKnown RBP eCLIP13.68□□□□□ -0.227e-6■■□□□ 12.2
CLN6-220ENST00000637450 Q56UQ5 140 aa13.68□□□□□ -0.22
CLN6-220ENST00000637450 LPCAT3Q6P1A2 487 aa13.68□□□□□ -0.22
CLN6-220ENST00000637450 LYG2Q86SG7 212 aa13.68□□□□□ -0.22
CLN6-220ENST00000637450 KIR2DL5AQ8N109 375 aa13.68□□□□□ -0.22
CLN6-220ENST00000637450 KIR2DL5BQ8NHK3 375 aa13.68□□□□□ -0.22
CLN6-220ENST00000637450 GPX8Q8TED1 209 aa13.68□□□□□ -0.22
CLN6-220ENST00000637450 ZNF414Q96IQ9 312 aa13.68□□□□□ -0.22
CLN6-220ENST00000637450 KMT2AQ03164 3969 aa13.68□□□□□ -0.22
CLN6-220ENST00000637450 OR4C46A6NHA9 309 aa13.67□□□□□ -0.22
CLN6-220ENST00000637450 CTSDP07339 412 aaPredicted RBP13.67□□□□□ -0.22
CLN6-220ENST00000637450 DEFB135Q30KP9 77 aa13.67□□□□□ -0.22
CLN6-220ENST00000637450 PHLDA2Q53GA4 152 aa13.67□□□□□ -0.22
CLN6-220ENST00000637450 STPG3Q8N7X2 389 aa13.67□□□□□ -0.22
CLN6-220ENST00000637450 LINC00476Q8WZB0 136 aa13.67□□□□□ -0.22
CLN6-220ENST00000637450 SLC25A46Q96AG3 418 aa13.67□□□□□ -0.22
CLN6-220ENST00000637450 RNF183Q96D59 192 aa13.67□□□□□ -0.22
CLN6-220ENST00000637450 SEC22AQ96IW7 307 aa13.67□□□□□ -0.22
CLN6-220ENST00000637450 SMPXQ9UHP9 88 aa13.67□□□□□ -0.22
CLN6-220ENST00000637450 CXorf65A6NEN9 183 aa13.66□□□□□ -0.22
CLN6-220ENST00000637450 EIF4EP06730 217 aaKnown RBP13.66□□□□□ -0.22
CLN6-220ENST00000637450 FCGR2BP31994 310 aaPredicted RBP13.66□□□□□ -0.22
CLN6-220ENST00000637450 TSPAN5P62079 268 aa13.66□□□□□ -0.22
CLN6-220ENST00000637450 PMS2P11Q13670 270 aa13.66□□□□□ -0.22
CLN6-220ENST00000637450 TBC1D26Q86UD7 250 aa13.66□□□□□ -0.22
CLN6-220ENST00000637450 GALNT14Q96FL9 552 aa13.66□□□□□ -0.22
CLN6-220ENST00000637450 I3L2K1 104 aa13.65□□□□□ -0.22
CLN6-220ENST00000637450 IGKV1-39P01597 117 aa13.65□□□□□ -0.22
CLN6-220ENST00000637450 IGKV1D-39P04432 117 aa13.65□□□□□ -0.22
CLN6-220ENST00000637450 ATF4P18848 351 aaPredicted RBP13.65□□□□□ -0.22
CLN6-220ENST00000637450 S100GP29377 79 aa13.65□□□□□ -0.22
CLN6-220ENST00000637450 RELQ04864 619 aaPredicted RBP13.65□□□□□ -0.22
CLN6-220ENST00000637450 OR10C1Q96KK4 312 aa13.65□□□□□ -0.22
CLN6-220ENST00000637450 RNF2Q99496 336 aa13.65□□□□□ -0.22
CLN6-220ENST00000637450 TXN2Q99757 166 aa13.65□□□□□ -0.22
CLN6-220ENST00000637450 MAP6D1Q9H9H5 199 aa13.65□□□□□ -0.22
CLN6-220ENST00000637450 A0A087WXM4 84 aa13.64□□□□□ -0.23
CLN6-220ENST00000637450 IGHV7-4-1A0A0J9YVY3 117 aa13.64□□□□□ -0.23
CLN6-220ENST00000637450 SMIM31A0A1B0GVY4 71 aa13.64□□□□□ -0.23
CLN6-220ENST00000637450 NUPR2A6NF83 97 aa13.64□□□□□ -0.23
CLN6-220ENST00000637450 CHEK1O14757 476 aa13.64□□□□□ -0.23
CLN6-220ENST00000637450 NUPL2O15504 423 aaKnown RBP13.64□□□□□ -0.23
CLN6-220ENST00000637450 RPL35AP18077 110 aaKnown RBP13.64□□□□□ -0.23
CLN6-220ENST00000637450 MFAP4P55083 255 aa13.64□□□□□ -0.23
CLN6-220ENST00000637450 UCP3P55916 312 aa13.64□□□□□ -0.23
CLN6-220ENST00000637450 CEMP1Q6PRD7 247 aaPredicted RBP13.64□□□□□ -0.23
CLN6-220ENST00000637450 H2BFWTQ7Z2G1 175 aa13.64□□□□□ -0.23
CLN6-220ENST00000637450 ZNF114Q8NC26 417 aa13.64□□□□□ -0.23
CLN6-220ENST00000637450 TMEM116Q8NCL8 245 aa13.64□□□□□ -0.23
CLN6-220ENST00000637450 OR4A16Q8NH70 328 aa13.64□□□□□ -0.23
CLN6-220ENST00000637450 MISP3Q96FF7 219 aa13.64□□□□□ -0.23
CLN6-220ENST00000637450 CMTM3Q96MX0 182 aa13.64□□□□□ -0.23
CLN6-220ENST00000637450 RHPN1-AS1Q9BWJ2 59 aa13.64□□□□□ -0.23
CLN6-220ENST00000637450 SCPEP1Q9HB40 452 aa13.64□□□□□ -0.23
CLN6-220ENST00000637450 COMMD3Q9UBI1 195 aa13.64□□□□□ -0.23
CLN6-220ENST00000637450 APOA1P02647 267 aa13.63□□□□□ -0.23
CLN6-220ENST00000637450 HSPE1P61604 102 aaKnown RBP13.63□□□□□ -0.23
CLN6-220ENST00000637450 PRCDQ00LT1 54 aa13.63□□□□□ -0.23
CLN6-220ENST00000637450 NXF2Q9GZY0 626 aaKnown RBP13.63□□□□□ -0.23
CLN6-220ENST00000637450 VCX3AQ9NNX9 186 aa13.63□□□□□ -0.23
CLN6-220ENST00000637450 TRAV14DV4A0A0A6YYC5 116 aa13.62□□□□□ -0.23
CLN6-220ENST00000637450 YIF1AO95070 293 aa13.62□□□□□ -0.23
CLN6-220ENST00000637450 LY6G6CO95867 125 aa13.62□□□□□ -0.23
CLN6-220ENST00000637450 MT-CO2P00403 227 aa13.62□□□□□ -0.23
CLN6-220ENST00000637450 RCVRNP35243 200 aa13.62□□□□□ -0.23
CLN6-220ENST00000637450 CMC4P56277 68 aaPredicted RBP13.62□□□□□ -0.23
CLN6-220ENST00000637450 SNX29P2Q8IUI4 249 aa13.62□□□□□ -0.23
CLN6-220ENST00000637450 APRG1Q8IVJ8 170 aa13.62□□□□□ -0.23
CLN6-220ENST00000637450 FAM90A2PQ658T7 463 aa13.61□□□□□ -0.23
CLN6-220ENST00000637450 MRGPRFQ96AM1 343 aa13.61□□□□□ -0.23
CLN6-220ENST00000637450 C6orf62Q9GZU0 229 aaPredicted RBP13.61□□□□□ -0.23
CLN6-220ENST00000637450 FRAS1Q86XX4 4008 aa13.61□□□□□ -0.23
CLN6-220ENST00000637450 IGHV3-49A0A0A0MS15 119 aa13.6□□□□□ -0.23
CLN6-220ENST00000637450 IGHV3-48P01763 117 aa13.6□□□□□ -0.23
CLN6-220ENST00000637450 ELK1P19419 428 aa13.6□□□□□ -0.23
CLN6-220ENST00000637450 NCS1P62166 190 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms