RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 ST8SIA3O43173 380 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 OR2J3O76001 311 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 BRI3O95415 125 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 CRYGCP07315 174 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 CTRB1P17538 263 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 HSPE1P61604 102 aaKnown RBP14.02□□□□□ -0.17
CLN3-243ENST00000635973 EGFEM1PQ0D2K5 195 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 CTRB2Q6GPI1 263 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 ZNF429Q86V71 674 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 FAM223AQ8IWN6 122 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 ENKURQ8TC29 256 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 GPR146Q96CH1 333 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 RAX2Q96IS3 184 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 ALX4Q9H161 411 aaPredicted RBP14.02□□□□□ -0.17
CLN3-243ENST00000635973 CACNG5Q9UF02 275 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 SHPKQ9UHJ6 478 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 TCRBP04435 133 aa14.01□□□□□ -0.17
CLN3-243ENST00000635973 OR4E1P0C645 316 aa14.01□□□□□ -0.17
CLN3-243ENST00000635973 HOXA1P49639 335 aaPredicted RBP14.01□□□□□ -0.17
CLN3-243ENST00000635973 DEFA1P59665 94 aa14.01□□□□□ -0.17
CLN3-243ENST00000635973 DEFA3P59666 94 aa14.01□□□□□ -0.17
CLN3-243ENST00000635973 PRCDQ00LT1 54 aa14.01□□□□□ -0.17
CLN3-243ENST00000635973 ATP5G2Q06055 141 aa14.01□□□□□ -0.17
CLN3-243ENST00000635973 WT1-ASQ06250 92 aa14.01□□□□□ -0.17
CLN3-243ENST00000635973 DCTN2Q13561 401 aaKnown RBP14.01□□□□□ -0.17
CLN3-243ENST00000635973 ANKRD55Q3KP44 614 aa14.01□□□□□ -0.17
CLN3-243ENST00000635973 SPINK9Q5DT21 86 aa14.01□□□□□ -0.17
CLN3-243ENST00000635973 LYZL2Q7Z4W2 148 aa14.01□□□□□ -0.17
CLN3-243ENST00000635973 NECAP1Q8NC96 275 aa14.01□□□□□ -0.17
CLN3-243ENST00000635973 OR11H1Q8NG94 326 aa14.01□□□□□ -0.17
CLN3-243ENST00000635973 P2RX4Q99571 388 aa14.01□□□□□ -0.17
CLN3-243ENST00000635973 ENY2Q9NPA8 101 aa14.01□□□□□ -0.17
CLN3-243ENST00000635973 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.01□□□□□ -0.17
CLN3-243ENST00000635973 NUDT15Q9NV35 164 aa14.01□□□□□ -0.17
CLN3-243ENST00000635973 DUXBA0A1W2PPF3 345 aa14□□□□□ -0.17
CLN3-243ENST00000635973 C9orf170A2RU37 121 aa14□□□□□ -0.17
CLN3-243ENST00000635973 I3L521 148 aa14□□□□□ -0.17
CLN3-243ENST00000635973 SULT1A3P0DMM9 295 aa14□□□□□ -0.17
CLN3-243ENST00000635973 SULT1A4P0DMN0 295 aa14□□□□□ -0.17
CLN3-243ENST00000635973 HIST1H1BP16401 226 aaKnown RBP14□□□□□ -0.17
CLN3-243ENST00000635973 RUNX1Q01196 453 aa14□□□□□ -0.17
CLN3-243ENST00000635973 CD69Q07108 199 aa14□□□□□ -0.17
CLN3-243ENST00000635973 OR1N2Q8NGR9 330 aa14□□□□□ -0.17
CLN3-243ENST00000635973 COQ8AQ8NI60 647 aa14□□□□□ -0.17
CLN3-243ENST00000635973 FBXL7Q9UJT9 491 aa14□□□□□ -0.17
CLN3-243ENST00000635973 TRBV9A0A0B4J1U6 114 aa13.99□□□□□ -0.17
CLN3-243ENST00000635973 ERHP84090 104 aaKnown RBP13.99□□□□□ -0.17
CLN3-243ENST00000635973 ZNF616Q08AN1 781 aa13.99□□□□□ -0.17
CLN3-243ENST00000635973 DHRS2Q13268 280 aa13.99□□□□□ -0.17
CLN3-243ENST00000635973 EXOSC2Q13868 293 aaKnown RBP13.99□□□□□ -0.17
CLN3-243ENST00000635973 C15orf32Q32M92 178 aa13.99□□□□□ -0.17
CLN3-243ENST00000635973 Q6ZRM9 215 aa13.99□□□□□ -0.17
CLN3-243ENST00000635973 LYG2Q86SG7 212 aa13.99□□□□□ -0.17
CLN3-243ENST00000635973 THYN1Q9P016 225 aa13.99□□□□□ -0.17
CLN3-243ENST00000635973 DNAH3Q8TD57 4116 aa13.99□□□□□ -0.17
CLN3-243ENST00000635973 ANKRD34BA5PLL1 514 aa13.98□□□□□ -0.17
CLN3-243ENST00000635973 LINC01619G3V211 115 aa13.98□□□□□ -0.17
CLN3-243ENST00000635973 NXPH3O95157 252 aa13.98□□□□□ -0.17
CLN3-243ENST00000635973 H2AFB2P0C5Z0 115 aa13.98□□□□□ -0.17
CLN3-243ENST00000635973 OR8U8P0C7N1 319 aa13.98□□□□□ -0.17
CLN3-243ENST00000635973 IFITM3Q01628 133 aa13.98□□□□□ -0.17
CLN3-243ENST00000635973 SMCO1Q147U7 214 aa13.98□□□□□ -0.17
CLN3-243ENST00000635973 NMSQ5H8A3 153 aa13.98□□□□□ -0.17
CLN3-243ENST00000635973 SLC25A24Q6NUK1 477 aa13.98□□□□□ -0.17
CLN3-243ENST00000635973 LRTM2Q8N967 370 aa13.98□□□□□ -0.17
CLN3-243ENST00000635973 CACFD1Q9UGQ2 172 aa13.98□□□□□ -0.17
CLN3-243ENST00000635973 F11RQ9Y624 299 aaKnown RBP13.98□□□□□ -0.17
CLN3-243ENST00000635973 IGLV11-55A0A075B6I3 123 aa13.97□□□□□ -0.17
CLN3-243ENST00000635973 IGHV4OR15-8A0A075B7B6 117 aa13.97□□□□□ -0.17
CLN3-243ENST00000635973 A0A087WW49 117 aa13.97□□□□□ -0.17
CLN3-243ENST00000635973 HSPB1P04792 205 aaKnown RBP13.97□□□□□ -0.17
CLN3-243ENST00000635973 HOXB5P09067 269 aa13.97□□□□□ -0.17
CLN3-243ENST00000635973 SPCS3P61009 180 aa13.97□□□□□ -0.17
CLN3-243ENST00000635973 OR2C3Q8N628 320 aa13.97□□□□□ -0.17
CLN3-243ENST00000635973 OR1L6Q8NGR2 347 aa13.97□□□□□ -0.17
CLN3-243ENST00000635973 OR1S1Q8NH92 325 aa13.97□□□□□ -0.17
CLN3-243ENST00000635973 FANCD2OSQ96PS1 177 aa13.97□□□□□ -0.17
CLN3-243ENST00000635973 TMED3Q9Y3Q3 217 aa13.97□□□□□ -0.17
CLN3-243ENST00000635973 CEBPZOSA8MTT3 80 aa13.96□□□□□ -0.17
CLN3-243ENST00000635973 NDUFB8O95169 186 aa13.96□□□□□ -0.17
CLN3-243ENST00000635973 SNCAP37840 140 aa13.96□□□□□ -0.17
CLN3-243ENST00000635973 FHL3Q13643 280 aa13.96□□□□□ -0.17
CLN3-243ENST00000635973 C9orf66Q5T8R8 295 aa13.96□□□□□ -0.17
CLN3-243ENST00000635973 ZNF343Q6P1L6 599 aa13.96□□□□□ -0.17
CLN3-243ENST00000635973 OR52B4Q8NGK2 314 aa13.96□□□□□ -0.17
CLN3-243ENST00000635973 OR52E5Q8NH55 327 aa13.96□□□□□ -0.17
CLN3-243ENST00000635973 EEF1AKMT3Q96AZ1 226 aa13.96□□□□□ -0.17
CLN3-243ENST00000635973 RANGRFQ9HD47 186 aaPredicted RBP13.96□□□□□ -0.17
CLN3-243ENST00000635973 PEF1Q9UBV8 284 aaKnown RBP13.96□□□□□ -0.17
CLN3-243ENST00000635973 A0A1B0GU03 582 aa13.95□□□□□ -0.18
CLN3-243ENST00000635973 IGHV3-23P01764 117 aa13.95□□□□□ -0.18
CLN3-243ENST00000635973 OR1P1Q8NH06 330 aa13.95□□□□□ -0.18
CLN3-243ENST00000635973 CXorf58Q96LI9 332 aa13.95□□□□□ -0.18
CLN3-243ENST00000635973 S4R3C0 116 aa13.95□□□□□ -0.18
CLN3-243ENST00000635973 NBEAL2Q6ZNJ1 2754 aa13.94□□□□□ -0.18
CLN3-243ENST00000635973 SEC14L6B5MCN3 397 aa13.94□□□□□ -0.18
CLN3-243ENST00000635973 IFNA21P01568 189 aa13.94□□□□□ -0.18
CLN3-243ENST00000635973 ZP3P21754 424 aa13.94□□□□□ -0.18
CLN3-243ENST00000635973 SUB1P53999 127 aaKnown RBP eCLIP13.94□□□□□ -0.18
CLN3-243ENST00000635973 SLURP1P55000 103 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms