RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 FBP1P09467 338 aa11.41□□□□□ -0.58
CLN3-242ENST00000635958 CXorf66Q5JRM2 361 aaPredicted RBP11.41□□□□□ -0.58
CLN3-242ENST00000635958 RBMS3Q6XE24 437 aaKnown RBP11.41□□□□□ -0.58
CLN3-242ENST00000635958 RPEQ96AT9 228 aa11.41□□□□□ -0.58
CLN3-242ENST00000635958 AJUBAQ96IF1 538 aa11.41□□□□□ -0.58
CLN3-242ENST00000635958 IGHV1-69DA0A0B4J2H0 117 aa11.4□□□□□ -0.58
CLN3-242ENST00000635958 FAM90A26D6RGX4 464 aa11.4□□□□□ -0.58
CLN3-242ENST00000635958 H0YJW9 148 aa11.4□□□□□ -0.58
CLN3-242ENST00000635958 FCGR3BO75015 233 aa11.4□□□□□ -0.58
CLN3-242ENST00000635958 AVPP01185 164 aa11.4□□□□□ -0.58
CLN3-242ENST00000635958 IGHV1-69P01742 117 aa11.4□□□□□ -0.58
CLN3-242ENST00000635958 EPHA1P21709 976 aa11.4□□□□□ -0.58
CLN3-242ENST00000635958 MC5RP33032 325 aa11.4□□□□□ -0.58
CLN3-242ENST00000635958 REG1BP48304 166 aa11.4□□□□□ -0.58
CLN3-242ENST00000635958 LGALS4P56470 323 aa11.4□□□□□ -0.58
CLN3-242ENST00000635958 HBG1P69891 147 aa11.4□□□□□ -0.58
CLN3-242ENST00000635958 HBG2P69892 147 aa11.4□□□□□ -0.58
CLN3-242ENST00000635958 DLK1P80370 383 aa11.4□□□□□ -0.58
CLN3-242ENST00000635958 LHFPL4Q7Z7J7 247 aa11.4□□□□□ -0.58
CLN3-242ENST00000635958 IGHV1-3A0A0C4DH29 117 aa11.39□□□□□ -0.59
CLN3-242ENST00000635958 NPFFO15130 113 aa11.39□□□□□ -0.59
CLN3-242ENST00000635958 HPRT1P00492 218 aa11.39□□□□□ -0.59
CLN3-242ENST00000635958 RND2P52198 227 aa11.39□□□□□ -0.59
CLN3-242ENST00000635958 OR2B8PP59922 312 aa11.39□□□□□ -0.59
CLN3-242ENST00000635958 CCL20P78556 96 aa11.39□□□□□ -0.59
CLN3-242ENST00000635958 ELOBQ15370 118 aa11.39□□□□□ -0.59
CLN3-242ENST00000635958 SLC25A24Q6NUK1 477 aa11.39□□□□□ -0.59
CLN3-242ENST00000635958 GAR1Q9NY12 217 aaKnown RBP11.39□□□□□ -0.59
CLN3-242ENST00000635958 A0A1W2PPI3 338 aa11.39□□□□□ -0.59
CLN3-242ENST00000635958 PAX9P55771 341 aa11.39□□□□□ -0.59
CLN3-242ENST00000635958 OR2B11Q5JQS5 317 aa11.39□□□□□ -0.59
CLN3-242ENST00000635958 KLF17Q5JT82 389 aaPredicted RBP11.39□□□□□ -0.59
CLN3-242ENST00000635958 PIP4P2Q8N4L2 257 aa11.39□□□□□ -0.59
CLN3-242ENST00000635958 OR4S2Q8NH73 311 aa11.39□□□□□ -0.59
CLN3-242ENST00000635958 SLC35D1Q9NTN3 355 aa11.39□□□□□ -0.59
CLN3-242ENST00000635958 TIMM9Q9Y5J7 89 aa11.39□□□□□ -0.59
CLN3-242ENST00000635958 CELSR1Q9NYQ6 3014 aa11.39□□□□□ -0.59
CLN3-242ENST00000635958 ZNF469Q96JG9 3925 aaPredicted RBP11.38□□□□□ -0.59
CLN3-242ENST00000635958 A0A1W2PRD5 423 aa11.38□□□□□ -0.59
CLN3-242ENST00000635958 A0A1W2PRF3 423 aa11.38□□□□□ -0.59
CLN3-242ENST00000635958 A0A1W2PRM7 423 aa11.38□□□□□ -0.59
CLN3-242ENST00000635958 LINC00587B1AMM8 73 aa11.38□□□□□ -0.59
CLN3-242ENST00000635958 CLDN34H7C241 214 aa11.38□□□□□ -0.59
CLN3-242ENST00000635958 S1PR2O95136 353 aa11.38□□□□□ -0.59
CLN3-242ENST00000635958 APOA2P02652 100 aa11.38□□□□□ -0.59
CLN3-242ENST00000635958 SAA4P35542 130 aa11.38□□□□□ -0.59
CLN3-242ENST00000635958 BPIFB3P59826 476 aa11.38□□□□□ -0.59
CLN3-242ENST00000635958 HAGHQ16775 308 aa11.38□□□□□ -0.59
CLN3-242ENST00000635958 ATP6V1FQ16864 119 aa11.38□□□□□ -0.59
CLN3-242ENST00000635958 RTL8BQ17RB0 113 aa11.38□□□□□ -0.59
CLN3-242ENST00000635958 ZNF674Q2M3X9 581 aa11.38□□□□□ -0.59
CLN3-242ENST00000635958 CCDC144NLQ6NUI1 221 aa11.38□□□□□ -0.59
CLN3-242ENST00000635958 PDPNQ86YL7 162 aa11.38□□□□□ -0.59
CLN3-242ENST00000635958 GPR146Q96CH1 333 aa11.38□□□□□ -0.59
CLN3-242ENST00000635958 CST7O76096 145 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 IGKV1-5P01602 117 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 OPN1MWP04001 364 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 P0C879 139 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 OPN1MW2P0DN77 364 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 OPN1MW3P0DN78 364 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 IGHV4-38-2P0DP08 117 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 POU2AF1Q16633 256 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 TMEM177Q53S58 311 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 CFHR4Q92496 578 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 GGACTQ9BVM4 153 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 MAGT1Q9H0U3 335 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 VAX2Q9UIW0 290 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 WASHC3Q9Y3C0 194 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 ACANP16112 2415 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 TRAV40A0A0B4J280 105 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 SYNGR2O43760 224 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 FSHBP01225 129 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 IGKV1-16P04430 117 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 BCL2P10415 239 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 CD1BP29016 333 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 SSX2Q16385 188 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 LRRC75BQ2VPJ9 315 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 THNSL2Q86YJ6 484 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 DYNAPQ8N1N2 210 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 CYB561D1Q8N8Q1 229 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 OR4C13Q8NGP0 309 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 RNASE11Q8TAA1 199 aaKnown RBP11.37□□□□□ -0.59
CLN3-242ENST00000635958 OSR1Q8TAX0 266 aaPredicted RBP11.37□□□□□ -0.59
CLN3-242ENST00000635958 HILPDAQ9Y5L2 63 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 TLN2Q9Y4G6 2542 aa11.37□□□□□ -0.59
CLN3-242ENST00000635958 TEP1Q99973 2627 aaKnown RBP11.36□□□□□ -0.59
CLN3-242ENST00000635958 SVEP1Q4LDE5 3571 aa11.36□□□□□ -0.59
CLN3-242ENST00000635958 TRBV24-1A0A075B6N3 115 aa11.36□□□□□ -0.59
CLN3-242ENST00000635958 SMAD7O15105 426 aaKnown RBP11.36□□□□□ -0.59
CLN3-242ENST00000635958 LY86O95711 162 aa11.36□□□□□ -0.59
CLN3-242ENST00000635958 TMEM50AO95807 157 aa11.36□□□□□ -0.59
CLN3-242ENST00000635958 MBP02144 154 aa11.36□□□□□ -0.59
CLN3-242ENST00000635958 NDUFA6P56556 154 aa11.36□□□□□ -0.59
CLN3-242ENST00000635958 KRTAP1-1Q07627 177 aa11.36□□□□□ -0.59
CLN3-242ENST00000635958 MOB3BQ86TA1 216 aa11.36□□□□□ -0.59
CLN3-242ENST00000635958 FLYWCH2Q96CP2 140 aaKnown RBP11.36□□□□□ -0.59
CLN3-242ENST00000635958 RNF5Q99942 180 aa11.36□□□□□ -0.59
CLN3-242ENST00000635958 PSENENQ9NZ42 101 aa11.36□□□□□ -0.59
CLN3-242ENST00000635958 DOK5Q9P104 306 aa11.36□□□□□ -0.59
CLN3-242ENST00000635958 F8P00451 2351 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms