RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 SERF2P84101 59 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 MAJINQ3KP22 176 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 PRAMEF5Q5TYX0 476 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 STPG4Q8N801 248 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 Q9UFV3 132 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 DSCAMO60469 2012 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 KMT2EQ8IZD2 1858 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 TRAV3A0A0B4J244 114 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 LY6HO94772 140 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 CGAP01215 116 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 CRISP2P16562 243 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 PMCHP20382 165 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 CD40P25942 277 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 GCSAMLQ5JQS6 135 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 OR1L6Q8NGR2 347 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 PINX1Q96BK5 328 aaKnown RBP11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 HEYLQ9NQ87 328 aaPredicted RBP11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 ACTL6BO94805 426 aa11.96□□□□□ -0.49
SHROOM1-208ENST00000617339 IGHV3-48P01763 117 aa11.96□□□□□ -0.49
SHROOM1-208ENST00000617339 FRMD6-AS1P0C7T7 363 aa11.96□□□□□ -0.49
SHROOM1-208ENST00000617339 HINT1P49773 126 aaPredicted RBP11.96□□□□□ -0.49
SHROOM1-208ENST00000617339 ZNF134P52741 427 aa11.96□□□□□ -0.49
SHROOM1-208ENST00000617339 PLGLAQ15195 96 aa11.96□□□□□ -0.49
SHROOM1-208ENST00000617339 TPTE2P1Q5T6R2 138 aa11.96□□□□□ -0.49
SHROOM1-208ENST00000617339 IGFL2Q6UWQ7 119 aa11.96□□□□□ -0.49
SHROOM1-208ENST00000617339 Q6ZN92 141 aa11.96□□□□□ -0.49
SHROOM1-208ENST00000617339 PSMG3Q9BT73 122 aaPredicted RBP11.96□□□□□ -0.49
SHROOM1-208ENST00000617339 MDFIC2A0A1B0GVS7 189 aa11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 SLC17A3O00476 420 aa11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 OR5G3P0C626 314 aa11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 COX7A1P24310 79 aa11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 RPL15P61313 204 aaKnown RBP11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 ZNF90Q03938 601 aa11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 MSMO1Q15800 293 aa11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 KIAA1644Q3SXP7 199 aa11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 OR5AU1Q8NGC0 362 aa11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 PXMP4Q9Y6I8 212 aa11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 TNFRSF1AP19438 455 aa11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 KITLGP21583 273 aa11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 ANKRD39Q53RE8 183 aa11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 TIMM23BQ5SRD1 257 aa11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 ABHD12Q8N2K0 398 aa11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 AGMATQ9BSE5 352 aa11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 RNF114Q9Y508 228 aa11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 NAV2Q8IVL1 2488 aa11.96□□□□□ -0.5
SHROOM1-208ENST00000617339 TRAV38-1A0A0B4J264 116 aa11.95□□□□□ -0.5
SHROOM1-208ENST00000617339 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.95□□□□□ -0.5
SHROOM1-208ENST00000617339 SLC35B1P78383 322 aa11.95□□□□□ -0.5
SHROOM1-208ENST00000617339 SLC35E1Q96K37 410 aa11.95□□□□□ -0.5
SHROOM1-208ENST00000617339 WNT10AQ9GZT5 417 aa11.95□□□□□ -0.5
SHROOM1-208ENST00000617339 MYO9AB2RTY4 2548 aa11.95□□□□□ -0.5
SHROOM1-208ENST00000617339 NKX6-3A6NJ46 265 aa11.95□□□□□ -0.5
SHROOM1-208ENST00000617339 TMEM250H0YL14 139 aa11.95□□□□□ -0.5
SHROOM1-208ENST00000617339 MMP23AO75900 390 aa11.95□□□□□ -0.5
SHROOM1-208ENST00000617339 SFXN3Q9BWM7 321 aa11.95□□□□□ -0.5
SHROOM1-208ENST00000617339 CTXND1A0A1B0GTU2 59 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 A8MXE2 369 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 CCL25O15444 150 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 IER3P46695 156 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 SPATA45Q537H7 98 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 UNQ5815/PRO19632Q6UWF5 114 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 LINC01551Q86U37 167 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 FAM90A1Q86YD7 464 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 QTRT1Q9BXR0 403 aaKnown RBP11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 RNF7Q9UBF6 113 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 ZFP30Q9Y2G7 519 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 TRGV10A0A0A0MS01 117 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 F6UZH7 168 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 CEACAM8P31997 349 aaPredicted RBP11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 LINC00596Q86U02 117 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 ZNF645Q8N7E2 425 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 MBD3L4A6NDZ8 208 aaPredicted RBP11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 MBD3L3A6NE82 208 aaPredicted RBP11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 MBD3L5A6NJ08 208 aaPredicted RBP11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 DIRC3C9JPN6 131 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 RBFOX2O43251 390 aaKnown RBP eCLIP11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 CCL3L1P16619 93 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 GNB1P62873 340 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 SIGLECL1Q8N7X8 197 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 MBD3L2Q8NHZ7 208 aaPredicted RBP11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 FAM122AQ96E09 287 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 TANC2Q9HCD6 1990 aa11.94□□□□□ -0.5
SHROOM1-208ENST00000617339 ABCA12Q86UK0 2595 aa11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 IGHV3-72A0A0B4J1Y9 119 aa11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 FCN1O00602 326 aa11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 HNRNPA3P51991 378 aaKnown RBP11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 SUMO1P63165 101 aaKnown RBP11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 OR10X1Q8NGY0 326 aa11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 IGFBPL1Q8WX77 278 aa11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 C22orf15Q8WYQ4 148 aa11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 C20orf144Q9BQM9 153 aa11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 MRPL18Q9H0U6 180 aaKnown RBP11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 TP53TG3Q9ULZ0 132 aa11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 ZNF462Q96JM2 2506 aa11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 GRNP28799 593 aaKnown RBP11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 GUSBP1Q15486 140 aa11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 MOB1BQ7L9L4 216 aa11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 OR4A16Q8NH70 328 aa11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 GCM1Q9NP62 436 aa11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 FBXL7Q9UJT9 491 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms