RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 COMMD9Q9P000 198 aa14.39□□□□□ -0.11
CDX1-202ENST00000616154 TRAV6A0A075B6T7 132 aa14.38□□□□□ -0.11
CDX1-202ENST00000616154 CRYGCP07315 174 aa14.38□□□□□ -0.11
CDX1-202ENST00000616154 APELAP0DMC3 54 aa14.38□□□□□ -0.11
CDX1-202ENST00000616154 NQO2P16083 231 aa14.38□□□□□ -0.11
CDX1-202ENST00000616154 F2RP25116 425 aa14.38□□□□□ -0.11
CDX1-202ENST00000616154 S100GP29377 79 aa14.38□□□□□ -0.11
CDX1-202ENST00000616154 RPL27AP46776 148 aaKnown RBP14.38□□□□□ -0.11
CDX1-202ENST00000616154 RHOGP84095 191 aa14.38□□□□□ -0.11
CDX1-202ENST00000616154 TBC1D26Q86UD7 250 aa14.38□□□□□ -0.11
CDX1-202ENST00000616154 NECAP1Q8NC96 275 aa14.38□□□□□ -0.11
CDX1-202ENST00000616154 GALNT14Q96FL9 552 aa14.38□□□□□ -0.11
CDX1-202ENST00000616154 EPPK1P58107 5090 aaKnown RBP14.37□□□□□ -0.11
CDX1-202ENST00000616154 B3GALNT1O75752 331 aa14.37□□□□□ -0.11
CDX1-202ENST00000616154 RLN1P04808 185 aa14.37□□□□□ -0.11
CDX1-202ENST00000616154 HLA-GP17693 338 aa14.37□□□□□ -0.11
CDX1-202ENST00000616154 ANXA7P20073 488 aaKnown RBP14.37□□□□□ -0.11
CDX1-202ENST00000616154 FAM209BQ5JX69 171 aa14.37□□□□□ -0.11
CDX1-202ENST00000616154 TMED4Q7Z7H5 227 aa14.37□□□□□ -0.11
CDX1-202ENST00000616154 OR2K2Q8NGT1 345 aa14.37□□□□□ -0.11
CDX1-202ENST00000616154 OR51H1Q8NH63 302 aa14.37□□□□□ -0.11
CDX1-202ENST00000616154 NAA60Q9H7X0 242 aa14.37□□□□□ -0.11
CDX1-202ENST00000616154 TUBA4BQ9H853 241 aa14.37□□□□□ -0.11
CDX1-202ENST00000616154 PEMTQ9UBM1 199 aa14.37□□□□□ -0.11
CDX1-202ENST00000616154 IZUMO1RA6ND01 250 aa14.36□□□□□ -0.11
CDX1-202ENST00000616154 HMX3A6NHT5 357 aa14.36□□□□□ -0.11
CDX1-202ENST00000616154 CGB1A6NKQ9 187 aa14.36□□□□□ -0.11
CDX1-202ENST00000616154 INMT-MINDY4F8WBC2 141 aa14.36□□□□□ -0.11
CDX1-202ENST00000616154 IL5P05113 134 aa14.36□□□□□ -0.11
CDX1-202ENST00000616154 TRIM16LQ309B1 348 aa14.36□□□□□ -0.11
CDX1-202ENST00000616154 SSX9Q7RTT3 188 aa14.36□□□□□ -0.11
CDX1-202ENST00000616154 SRSF8Q9BRL6 282 aaKnown RBP14.36□□□□□ -0.11
CDX1-202ENST00000616154 BMPR1BO00238 502 aa14.35□□□□□ -0.11
CDX1-202ENST00000616154 UPK2O00526 184 aa14.35□□□□□ -0.11
CDX1-202ENST00000616154 S1PR2O95136 353 aa14.35□□□□□ -0.11
CDX1-202ENST00000616154 OR4E1P0C645 316 aa14.35□□□□□ -0.11
CDX1-202ENST00000616154 CTRB1P17538 263 aa14.35□□□□□ -0.11
CDX1-202ENST00000616154 UCP1P25874 307 aa14.35□□□□□ -0.11
CDX1-202ENST00000616154 OR2B8PP59922 312 aa14.35□□□□□ -0.11
CDX1-202ENST00000616154 PPP1R1AQ13522 171 aa14.35□□□□□ -0.11
CDX1-202ENST00000616154 EXOSC2Q13868 293 aaKnown RBP14.35□□□□□ -0.11
CDX1-202ENST00000616154 CTRB2Q6GPI1 263 aa14.35□□□□□ -0.11
CDX1-202ENST00000616154 FANCD2OSQ96PS1 177 aa14.35□□□□□ -0.11
CDX1-202ENST00000616154 TP53RKQ96S44 253 aa14.35□□□□□ -0.11
CDX1-202ENST00000616154 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.34□□□□□ -0.11
CDX1-202ENST00000616154 A0A0B4J293 547 aa14.34□□□□□ -0.11
CDX1-202ENST00000616154 C3orf85A0A1B0GTC6 90 aa14.34□□□□□ -0.11
CDX1-202ENST00000616154 PRAF2O60831 178 aa14.34□□□□□ -0.11
CDX1-202ENST00000616154 PRH1P02810 166 aa14.34□□□□□ -0.11
CDX1-202ENST00000616154 AKR1C4P17516 323 aa14.34□□□□□ -0.11
CDX1-202ENST00000616154 PSMB6P28072 239 aa14.34□□□□□ -0.11
CDX1-202ENST00000616154 ATP5G2Q06055 141 aa14.34□□□□□ -0.11
CDX1-202ENST00000616154 ZNF585BQ52M93 769 aa14.34□□□□□ -0.11
CDX1-202ENST00000616154 GLYATL2Q8WU03 294 aa14.34□□□□□ -0.11
CDX1-202ENST00000616154 FYTTD1Q96QD9 318 aaKnown RBP14.34□□□□□ -0.11
CDX1-202ENST00000616154 TMEM140Q9NV12 185 aa14.34□□□□□ -0.11
CDX1-202ENST00000616154 DMRT1Q9Y5R6 373 aa14.34□□□□□ -0.11
CDX1-202ENST00000616154 C9orf170A2RU37 121 aa14.33□□□□□ -0.12
CDX1-202ENST00000616154 C7orf66A4D0T2 115 aa14.33□□□□□ -0.12
CDX1-202ENST00000616154 SFT2D2O95562 160 aa14.33□□□□□ -0.12
CDX1-202ENST00000616154 AREGP15514 252 aa14.33□□□□□ -0.12
CDX1-202ENST00000616154 DHRS2Q13268 280 aa14.33□□□□□ -0.12
CDX1-202ENST00000616154 TMEM187Q14656 261 aa14.33□□□□□ -0.12
CDX1-202ENST00000616154 THOC7Q6I9Y2 204 aaKnown RBP14.33□□□□□ -0.12
CDX1-202ENST00000616154 LINC00322Q6ZN03 302 aaPredicted RBP14.33□□□□□ -0.12
CDX1-202ENST00000616154 LYG2Q86SG7 212 aa14.33□□□□□ -0.12
CDX1-202ENST00000616154 TMEM222Q9H0R3 208 aa14.33□□□□□ -0.12
CDX1-202ENST00000616154 TRAV3A0A0B4J244 114 aa14.32□□□□□ -0.12
CDX1-202ENST00000616154 TEX13DA0A0J9YY54 714 aaPredicted RBP14.32□□□□□ -0.12
CDX1-202ENST00000616154 IGLC7A0M8Q6 106 aa14.32□□□□□ -0.12
CDX1-202ENST00000616154 MARCH11A6NNE9 402 aa14.32□□□□□ -0.12
CDX1-202ENST00000616154 DHFRP00374 187 aa14.32□□□□□ -0.12
CDX1-202ENST00000616154 OR5AC1P0C628 307 aa14.32□□□□□ -0.12
CDX1-202ENST00000616154 C15orf32Q32M92 178 aa14.32□□□□□ -0.12
CDX1-202ENST00000616154 ADAMTSL5Q6ZMM2 481 aa14.32□□□□□ -0.12
CDX1-202ENST00000616154 LRTM2Q8N967 370 aa14.32□□□□□ -0.12
CDX1-202ENST00000616154 KCNIP3Q9Y2W7 256 aa14.32□□□□□ -0.12
CDX1-202ENST00000616154 BIRC6Q9NR09 4857 aa14.31□□□□□ -0.12
CDX1-202ENST00000616154 IGLV11-55A0A075B6I3 123 aa14.31□□□□□ -0.12
CDX1-202ENST00000616154 OR2J3O76001 311 aa14.31□□□□□ -0.12
CDX1-202ENST00000616154 CDS2O95674 445 aa14.31□□□□□ -0.12
CDX1-202ENST00000616154 MYOD1P15172 320 aa14.31□□□□□ -0.12
CDX1-202ENST00000616154 RPA2P15927 270 aa14.31□□□□□ -0.12
CDX1-202ENST00000616154 HIST1H1BP16401 226 aaKnown RBP14.31□□□□□ -0.12
CDX1-202ENST00000616154 CD81P60033 236 aa14.31□□□□□ -0.12
CDX1-202ENST00000616154 CD300EQ496F6 205 aaPredicted RBP14.31□□□□□ -0.12
CDX1-202ENST00000616154 TMEM56Q96MV1 263 aa14.31□□□□□ -0.12
CDX1-202ENST00000616154 PLEKHA3Q9HB20 300 aa14.31□□□□□ -0.12
CDX1-202ENST00000616154 TMEM56-RWDD3S4R434 201 aa14.31□□□□□ -0.12
CDX1-202ENST00000616154 A0A0B4J2A0 478 aa14.3□□□□□ -0.12
CDX1-202ENST00000616154 SNRPGP15A8MWD9 76 aa14.3□□□□□ -0.12
CDX1-202ENST00000616154 IGKV1-39P01597 117 aa14.3□□□□□ -0.12
CDX1-202ENST00000616154 HLA-AP01891 365 aaKnown RBP14.3□□□□□ -0.12
CDX1-202ENST00000616154 IGKV1D-39P04432 117 aa14.3□□□□□ -0.12
CDX1-202ENST00000616154 ERVK-16P61578 105 aa14.3□□□□□ -0.12
CDX1-202ENST00000616154 SP6Q3SY56 376 aa14.3□□□□□ -0.12
CDX1-202ENST00000616154 C4orf46Q504U0 113 aa14.3□□□□□ -0.12
CDX1-202ENST00000616154 Q6ZNX1 250 aa14.3□□□□□ -0.12
CDX1-202ENST00000616154 C19orf35Q6ZS72 473 aa14.3□□□□□ -0.12
CDX1-202ENST00000616154 HSD17B13Q7Z5P4 300 aaPredicted RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms