RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 IL36BQ9NZH7 164 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 FAM166AQ6J272 317 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 REC114Q7Z4M0 266 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 MAP1LC3AQ9H492 121 aa11.76□□□□□ -0.53
CPSF1-212ENST00000616140 A0A1W2PS18 150 aa11.75□□□□□ -0.53
CPSF1-212ENST00000616140 C1QTNF9BB2RNN3 333 aa11.75□□□□□ -0.53
CPSF1-212ENST00000616140 CX3CL1P78423 397 aa11.75□□□□□ -0.53
CPSF1-212ENST00000616140 RELQ04864 619 aaPredicted RBP11.75□□□□□ -0.53
CPSF1-212ENST00000616140 MIR17HGQ75NE6 70 aa11.75□□□□□ -0.53
CPSF1-212ENST00000616140 RAB37Q96AX2 223 aa11.75□□□□□ -0.53
CPSF1-212ENST00000616140 WNT10AQ9GZT5 417 aa11.75□□□□□ -0.53
CPSF1-212ENST00000616140 KLK15Q9H2R5 256 aa11.75□□□□□ -0.53
CPSF1-212ENST00000616140 PHLDA3Q9Y5J5 127 aa11.75□□□□□ -0.53
CPSF1-212ENST00000616140 HEATR5AQ86XA9 2040 aa11.75□□□□□ -0.53
CPSF1-212ENST00000616140 ZFHX2Q9C0A1 2572 aaPredicted RBP11.75□□□□□ -0.53
CPSF1-212ENST00000616140 NAPSAO96009 420 aa11.75□□□□□ -0.53
CPSF1-212ENST00000616140 CCL3L1P16619 93 aa11.75□□□□□ -0.53
CPSF1-212ENST00000616140 ZFP36L1Q07352 338 aaKnown RBP11.75□□□□□ -0.53
CPSF1-212ENST00000616140 RNF144BQ7Z419 303 aa11.75□□□□□ -0.53
CPSF1-212ENST00000616140 FOXD3Q9UJU5 478 aaPredicted RBP11.75□□□□□ -0.53
CPSF1-212ENST00000616140 TCF20Q9UGU0 1960 aaKnown RBP11.75□□□□□ -0.53
CPSF1-212ENST00000616140 C5orf63A6NC05 138 aa11.75□□□□□ -0.53
CPSF1-212ENST00000616140 PINLYPA6NC86 204 aa11.75□□□□□ -0.53
CPSF1-212ENST00000616140 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.75□□□□□ -0.53
CPSF1-212ENST00000616140 MRPL20Q9BYC9 149 aaKnown RBP11.75□□□□□ -0.53
CPSF1-212ENST00000616140 WFDC1Q9HC57 220 aa11.75□□□□□ -0.53
CPSF1-212ENST00000616140 SBF1O95248 1867 aa11.75□□□□□ -0.53
CPSF1-212ENST00000616140 CTAG1AP78358 180 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 ARFGEF3Q5TH69 2177 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 H3BVH4 76 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 RBFOX2O43251 390 aaKnown RBP eCLIP11.74□□□□□ -0.531e-7■■■■□ 24.7
CPSF1-212ENST00000616140 LINC00271P0C7V0 271 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 EBLN2Q6P2I7 272 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 ZCCHC24Q8N2G6 241 aaKnown RBP11.74□□□□□ -0.53
CPSF1-212ENST00000616140 CACNA1AO00555 2505 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 IGHV3-49A0A0A0MS15 119 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 LINC00587B1AMM8 73 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 TM4SF5O14894 197 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 C17orf82Q86X59 251 aaPredicted RBP11.74□□□□□ -0.53
CPSF1-212ENST00000616140 LRTM2Q8N967 370 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 OR4D5Q8NGN0 318 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 NABP1Q96AH0 204 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 TBL2Q9Y4P3 447 aaKnown RBP11.74□□□□□ -0.53
CPSF1-212ENST00000616140 PEX7O00628 323 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 SS18L1O75177 396 aaPredicted RBP11.74□□□□□ -0.53
CPSF1-212ENST00000616140 C1QTNF9P0C862 333 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 APOBEC3AP31941 199 aaPredicted RBP11.74□□□□□ -0.53
CPSF1-212ENST00000616140 WDR82Q6UXN9 313 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 ZNF497Q6ZNH5 498 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 TMEM144Q7Z5S9 345 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 DPM3Q9P2X0 92 aa11.74□□□□□ -0.53
CPSF1-212ENST00000616140 IGKV3D-15A0A087WSY6 115 aa11.73□□□□□ -0.53
CPSF1-212ENST00000616140 IGKV3-15P01624 115 aa11.73□□□□□ -0.53
CPSF1-212ENST00000616140 RPS20P60866 119 aaKnown RBP11.73□□□□□ -0.53
CPSF1-212ENST00000616140 OR52E5Q8NH55 327 aa11.73□□□□□ -0.53
CPSF1-212ENST00000616140 FOXI3A8MTJ6 420 aaPredicted RBP11.73□□□□□ -0.53
CPSF1-212ENST00000616140 SFTPCP11686 197 aa11.73□□□□□ -0.53
CPSF1-212ENST00000616140 PSG9Q00887 426 aa11.73□□□□□ -0.53
CPSF1-212ENST00000616140 CACNG8Q8WXS5 425 aa11.73□□□□□ -0.53
CPSF1-212ENST00000616140 IGKV1-27A0A075B6S5 117 aa11.73□□□□□ -0.53
CPSF1-212ENST00000616140 IGHV3OR16-8A0A075B7F1 116 aa11.73□□□□□ -0.53
CPSF1-212ENST00000616140 LOC107984156A0A0G2JMH3 177 aa11.73□□□□□ -0.53
CPSF1-212ENST00000616140 PGPEP1LA6NFU8 196 aa11.73□□□□□ -0.53
CPSF1-212ENST00000616140 NUDT3O95989 172 aa11.73□□□□□ -0.53
CPSF1-212ENST00000616140 NPPCP23582 126 aa11.73□□□□□ -0.53
CPSF1-212ENST00000616140 BSPH1Q075Z2 132 aa11.73□□□□□ -0.53
CPSF1-212ENST00000616140 LY6EQ16553 131 aa11.73□□□□□ -0.53
CPSF1-212ENST00000616140 ARL17AQ8IVW1 177 aa11.73□□□□□ -0.53
CPSF1-212ENST00000616140 C14orf144Q96I85 54 aa11.73□□□□□ -0.53
CPSF1-212ENST00000616140 SRCAPQ6ZRS2 3230 aa11.73□□□□□ -0.53
CPSF1-212ENST00000616140 DOCK11Q5JSL3 2073 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 TMPRSS3P57727 454 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 TBR1Q16650 682 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 FAM131CQ96AQ9 280 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 TMEM136Q6ZRR5 245 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 RTN4RL2Q86UN3 420 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 FAM19A2Q8N3H0 131 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 TMEM70Q9BUB7 260 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 VWA8A3KMH1 1905 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 SAA2-SAA4A0A096LPE2 208 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 ZNF324O75467 553 aaPredicted RBP11.72□□□□□ -0.53
CPSF1-212ENST00000616140 SAA2P0DJI9 122 aaPredicted RBP11.72□□□□□ -0.53
CPSF1-212ENST00000616140 HERPUD1Q15011 391 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 CYTL1Q9NRR1 136 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 MUC21A0A0G2JKD1 596 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 MUC21A0A140T8X8 626 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 C17orf100A8MU93 164 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 YPEL1O60688 119 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 HIST1H2BKO60814 126 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 HIST1H2BJP06899 126 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 SAA1P0DJI8 122 aaPredicted RBP11.72□□□□□ -0.53
CPSF1-212ENST00000616140 HIST1H2BOP23527 126 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 HIST1H2BBP33778 126 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 HIST1H2BDP58876 126 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 HIST1H2BCP62807 126 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 CSRP2Q16527 193 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 HIST2H2BEQ16778 126 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 MORN2Q502X0 79 aa11.72□□□□□ -0.53
CPSF1-212ENST00000616140 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.72□□□□□ -0.53
CPSF1-212ENST00000616140 MUC21Q5SSG8 566 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 147.9 ms