RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 LCN12Q6JVE5 192 aa10.45□□□□□ -0.74
LIG1-221ENST00000613670 MOB3BQ86TA1 216 aa10.45□□□□□ -0.74
LIG1-221ENST00000613670 JPT1Q9UK76 154 aa10.45□□□□□ -0.74
LIG1-221ENST00000613670 MLNRO43193 412 aa10.45□□□□□ -0.74
LIG1-221ENST00000613670 IGLV2-14P01704 120 aa10.45□□□□□ -0.74
LIG1-221ENST00000613670 SSBP4Q9BWG4 385 aaPredicted RBP10.45□□□□□ -0.74
LIG1-221ENST00000613670 APC2O95996 2303 aa10.45□□□□□ -0.74
LIG1-221ENST00000613670 DAZAP2Q15038 168 aaPredicted RBP10.44□□□□□ -0.74
LIG1-221ENST00000613670 PAXXQ9BUH6 204 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 SPRR3Q9UBC9 169 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 AMMECR1Q9Y4X0 333 aaPredicted RBP10.44□□□□□ -0.74
LIG1-221ENST00000613670 NKX6-3A6NJ46 265 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 C8orf88P0DMB2 117 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 CCL8P80075 99 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 MLANAQ16655 118 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 OR9G1Q8NH87 305 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 NKX2-8O15522 239 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 AMY1AP04745 511 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 TYMSP04818 313 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 PRB4P10163 310 aaPredicted RBP10.44□□□□□ -0.74
LIG1-221ENST00000613670 KRTAP27-1Q3LI81 207 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 C10orf113Q5VZT2 155 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 LHFPL4Q7Z7J7 247 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 WFDC8Q8IUA0 241 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 OR2T6Q8NHC8 308 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 ZNF596Q8TC21 504 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 ADTRPQ96IZ2 230 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 DIRC2Q96SL1 478 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 PARD6GQ9BYG4 376 aaPredicted RBP10.44□□□□□ -0.74
LIG1-221ENST00000613670 WASHC3Q9Y3C0 194 aa10.44□□□□□ -0.74
LIG1-221ENST00000613670 IGHV3-72A0A0B4J1Y9 119 aa10.43□□□□□ -0.74
LIG1-221ENST00000613670 GFRA3O60609 400 aa10.43□□□□□ -0.74
LIG1-221ENST00000613670 REG1AP05451 166 aa10.43□□□□□ -0.74
LIG1-221ENST00000613670 COA6Q5JTJ3 125 aaKnown RBP10.43□□□□□ -0.74
LIG1-221ENST00000613670 BHLHA15Q7RTS1 189 aaPredicted RBP10.43□□□□□ -0.74
LIG1-221ENST00000613670 PDPNQ86YL7 162 aa10.43□□□□□ -0.74
LIG1-221ENST00000613670 DYNLRB1Q9NP97 96 aa10.43□□□□□ -0.74
LIG1-221ENST00000613670 COX19Q49B96 90 aa10.43□□□□□ -0.74
LIG1-221ENST00000613670 Q6ZT83 130 aa10.43□□□□□ -0.74
LIG1-221ENST00000613670 FLYWCH2Q96CP2 140 aaKnown RBP10.43□□□□□ -0.74
LIG1-221ENST00000613670 TRAV5A0A0B4J249 113 aa10.43□□□□□ -0.74
LIG1-221ENST00000613670 SERTM2A0A1B0GWG4 89 aa10.43□□□□□ -0.74
LIG1-221ENST00000613670 VSTM5A8MXK1 200 aa10.43□□□□□ -0.74
LIG1-221ENST00000613670 HCP5Q6MZN7 132 aa10.43□□□□□ -0.74
LIG1-221ENST00000613670 CD177Q8N6Q3 437 aa10.43□□□□□ -0.74
LIG1-221ENST00000613670 CCL17Q92583 94 aa10.43□□□□□ -0.74
LIG1-221ENST00000613670 USP34Q70CQ2 3546 aa10.43□□□□□ -0.74
LIG1-221ENST00000613670 CFAP54Q96N23 3096 aa10.43□□□□□ -0.74
LIG1-221ENST00000613670 NPIPB3Q92617 1050 aa10.42□□□□□ -0.74
LIG1-221ENST00000613670 OR8B2Q96RD0 313 aa10.42□□□□□ -0.74
LIG1-221ENST00000613670 C10orf142B7Z368 130 aa10.42□□□□□ -0.74
LIG1-221ENST00000613670 FRMD6-AS1P0C7T7 363 aa10.42□□□□□ -0.74
LIG1-221ENST00000613670 CT45A6P0DMU7 189 aa10.42□□□□□ -0.74
LIG1-221ENST00000613670 CT45A5P0DMU8 189 aa10.42□□□□□ -0.74
LIG1-221ENST00000613670 CT45A7P0DMV0 189 aa10.42□□□□□ -0.74
LIG1-221ENST00000613670 CT45A1Q5HYN5 189 aa10.42□□□□□ -0.74
LIG1-221ENST00000613670 CT45A3Q8NHU0 189 aa10.42□□□□□ -0.74
LIG1-221ENST00000613670 LINC00479Q96M42 142 aa10.42□□□□□ -0.74
LIG1-221ENST00000613670 LAMTOR2Q9Y2Q5 125 aa10.42□□□□□ -0.74
LIG1-221ENST00000613670 TRBV20OR9-2A0A075B6H5 130 aa10.42□□□□□ -0.74
LIG1-221ENST00000613670 SAA2-SAA4A0A096LPE2 208 aa10.42□□□□□ -0.74
LIG1-221ENST00000613670 SAA2P0DJI9 122 aaPredicted RBP10.42□□□□□ -0.74
LIG1-221ENST00000613670 PYYP10082 97 aa10.42□□□□□ -0.74
LIG1-221ENST00000613670 LPAR2Q9HBW0 351 aa10.42□□□□□ -0.74
LIG1-221ENST00000613670 RNF7Q9UBF6 113 aa10.42□□□□□ -0.74
LIG1-221ENST00000613670 FBXL7Q9UJT9 491 aa10.42□□□□□ -0.74
LIG1-221ENST00000613670 PGPA6NDG6 321 aa10.41□□□□□ -0.74
LIG1-221ENST00000613670 ERVK11-1P61568 191 aa10.41□□□□□ -0.74
LIG1-221ENST00000613670 RNFT1Q5M7Z0 435 aa10.41□□□□□ -0.74
LIG1-221ENST00000613670 CHRDL1Q9BU40 450 aa10.41□□□□□ -0.74
LIG1-221ENST00000613670 TRAV17A0A0B4J275 112 aa10.41□□□□□ -0.74
LIG1-221ENST00000613670 hADV38S2A0JD32 116 aa10.41□□□□□ -0.74
LIG1-221ENST00000613670 HTR1DP28221 377 aa10.41□□□□□ -0.74
LIG1-221ENST00000613670 RPL15P61313 204 aaKnown RBP10.41□□□□□ -0.74
LIG1-221ENST00000613670 SSX8Q7RTT4 187 aa10.41□□□□□ -0.74
LIG1-221ENST00000613670 ZNF738Q8NE65 137 aa10.41□□□□□ -0.74
LIG1-221ENST00000613670 OR10W1Q8NGF6 305 aa10.41□□□□□ -0.74
LIG1-221ENST00000613670 ZNF324O75467 553 aaPredicted RBP10.41□□□□□ -0.74
LIG1-221ENST00000613670 RPL8P62917 257 aaKnown RBP10.41□□□□□ -0.74
LIG1-221ENST00000613670 FAM216BQ8N7L0 139 aa10.41□□□□□ -0.74
LIG1-221ENST00000613670 OR1L8Q8NGR8 309 aa10.41□□□□□ -0.74
LIG1-221ENST00000613670 KCNS1Q96KK3 526 aa10.41□□□□□ -0.74
LIG1-221ENST00000613670 CNIH1O95406 144 aa10.4□□□□□ -0.74
LIG1-221ENST00000613670 P01737 135 aa10.4□□□□□ -0.74
LIG1-221ENST00000613670 HIST1H1EP10412 219 aaKnown RBP10.4□□□□□ -0.74
LIG1-221ENST00000613670 RELBQ01201 579 aa10.4□□□□□ -0.74
LIG1-221ENST00000613670 PGLYRP4Q96LB8 373 aa10.4□□□□□ -0.74
LIG1-221ENST00000613670 SAP30LQ9HAJ7 183 aa10.4□□□□□ -0.74
LIG1-221ENST00000613670 TRBV9A0A0B4J1U6 114 aa10.4□□□□□ -0.74
LIG1-221ENST00000613670 C15orf61A6NNL5 157 aa10.4□□□□□ -0.74
LIG1-221ENST00000613670 J3QW42 95 aa10.4□□□□□ -0.74
LIG1-221ENST00000613670 Q6ZR03 302 aa10.4□□□□□ -0.74
LIG1-221ENST00000613670 OR1L4Q8NGR5 311 aa10.4□□□□□ -0.74
LIG1-221ENST00000613670 RAB1CQ92928 201 aa10.4□□□□□ -0.74
LIG1-221ENST00000613670 RBM14Q96PK6 669 aaKnown RBP10.4□□□□□ -0.74
LIG1-221ENST00000613670 CDX2Q99626 313 aaPredicted RBP10.4□□□□□ -0.74
LIG1-221ENST00000613670 MOSP00540 346 aa10.4□□□□□ -0.74
LIG1-221ENST00000613670 GPX1P07203 203 aa10.4□□□□□ -0.74
LIG1-221ENST00000613670 COL8A2P25067 703 aa10.4□□□□□ -0.74
LIG1-221ENST00000613670 COL8A1P27658 744 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms