RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 MAP1LC3CQ9BXW4 147 aa8.76□□□□□ -1.01
LIG1-220ENST00000601091 SH2D2AQ9NP31 389 aa8.76□□□□□ -1.01
LIG1-220ENST00000601091 GPR6P46095 362 aaPredicted RBP8.76□□□□□ -1.01
LIG1-220ENST00000601091 FOXL1Q12952 345 aa8.76□□□□□ -1.01
LIG1-220ENST00000601091 BAGE3Q86Y29 109 aa8.76□□□□□ -1.01
LIG1-220ENST00000601091 BAGE2Q86Y30 109 aa8.76□□□□□ -1.01
LIG1-220ENST00000601091 CISD2Q8N5K1 135 aaKnown RBP8.76□□□□□ -1.01
LIG1-220ENST00000601091 CISD1Q9NZ45 108 aaKnown RBP8.76□□□□□ -1.01
LIG1-220ENST00000601091 PCDH15Q96QU1 1955 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 PAGE4O60829 102 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 WNT2P09544 360 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 PRTN3P24158 256 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 IL15RAQ13261 267 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 HEATR1Q9H583 2144 aaKnown RBP8.75□□□□□ -1.01
LIG1-220ENST00000601091 C11orf94C9JXX5 98 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 M0R1B8 84 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 HBZP02008 142 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 ACP1P24666 158 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 LHX2P50458 406 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 DRAM1Q8N682 238 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 RNF138Q8WVD3 245 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 SGK494Q96LW2 274 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 IGLV3-1P01715 115 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 B3GALT5-AS1P59052 145 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 SPEM2Q0P670 501 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 RNF152Q8N8N0 203 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 OR1L1Q8NH94 360 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 CACNA1GO43497 2377 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 ROS1P08922 2347 aa8.75□□□□□ -1.01
LIG1-220ENST00000601091 CNOT1A5YKK6 2376 aaKnown RBP8.74□□□□□ -1.01
LIG1-220ENST00000601091 IGKV3D-15A0A087WSY6 115 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 LOC102723971A0A1B0GUV8 181 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 TMEM189A5PLL7 270 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 AGFG2O95081 481 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 ZNF645Q8N7E2 425 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 PINLYPA6NC86 204 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 SPRY3O43610 288 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 NAPSAO96009 420 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 IGHV3-13P01766 116 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 IGHV3-7P01780 117 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 TCTAP57738 103 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 RPEL1Q2QD12 228 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 ZNF439Q8NDP4 499 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 OR4B1Q8NGF8 309 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 FAM103A1Q9BTL3 118 aaKnown RBP8.74□□□□□ -1.01
LIG1-220ENST00000601091 TRGV10A0A0A0MS01 117 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 GAGE12JA6NER3 117 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 GAGE7O76087 117 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 GAGE12FP0CL80 117 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 GAGE12GP0CL81 117 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 GAGE12IP0CL82 117 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 PSG9Q00887 426 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 GAGE4Q13068 117 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 ZNF826PQ6ZT77 177 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 FAM214BQ7L5A3 538 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 TPRX1Q8N7U7 411 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 LIME1Q9H400 295 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 PROK2Q9HC23 129 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 TRAPPC1Q9Y5R8 145 aa8.74□□□□□ -1.01
LIG1-220ENST00000601091 NCOA6Q14686 2063 aaPredicted RBP8.74□□□□□ -1.01
LIG1-220ENST00000601091 A0A087WWC5 75 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 NKX2-8O15522 239 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 ELOBQ15370 118 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 RTL8BQ17RB0 113 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 DEFB109BQ30KR1 87 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 TIGITQ495A1 244 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 CLDND2Q8NHS1 167 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 NEU4Q8WWR8 484 aaPredicted RBP8.73□□□□□ -1.01
LIG1-220ENST00000601091 WDR61Q9GZS3 305 aaKnown RBP8.73□□□□□ -1.01
LIG1-220ENST00000601091 NBEAQ8NFP9 2946 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 LRRC30A6NM36 301 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 CA1P00915 261 aaPredicted RBP8.73□□□□□ -1.01
LIG1-220ENST00000601091 APOA2P02652 100 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 PRDX2P32119 198 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 FOXG1P55316 489 aaPredicted RBP8.73□□□□□ -1.01
LIG1-220ENST00000601091 TAS2R45P59539 299 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 A0A0U1RRA0 63 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 HRASP01112 189 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 FTH1P19P0C7X4 201 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 COL10A1Q03692 680 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 SSC4DQ8WTU2 575 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 GATAD1Q8WUU5 269 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 TMUB1Q9BVT8 246 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 PTPRSQ13332 1948 aa8.73□□□□□ -1.01
LIG1-220ENST00000601091 TRAV24A0A0B4J272 114 aa8.72□□□□□ -1.01
LIG1-220ENST00000601091 LY6G6EA0A0G2JKS1 128 aa8.72□□□□□ -1.01
LIG1-220ENST00000601091 C3orf80F5H4A9 247 aa8.72□□□□□ -1.01
LIG1-220ENST00000601091 NEURL1O76050 574 aa8.72□□□□□ -1.01
LIG1-220ENST00000601091 MGST1P10620 155 aaKnown RBP8.72□□□□□ -1.01
LIG1-220ENST00000601091 PLA2G5P39877 138 aa8.72□□□□□ -1.01
LIG1-220ENST00000601091 ICAM4Q14773 271 aa8.72□□□□□ -1.01
LIG1-220ENST00000601091 NMSQ5H8A3 153 aa8.72□□□□□ -1.01
LIG1-220ENST00000601091 C16orf82Q7Z2V1 217 aa8.72□□□□□ -1.01
LIG1-220ENST00000601091 U3KQA8 63 aa8.72□□□□□ -1.01
LIG1-220ENST00000601091 GTF3C1Q12789 2109 aa8.72□□□□□ -1.01
LIG1-220ENST00000601091 A0A1B0GW64 132 aa8.72□□□□□ -1.01
LIG1-220ENST00000601091 FOXI3A8MTJ6 420 aaPredicted RBP8.72□□□□□ -1.01
LIG1-220ENST00000601091 UCNP55089 124 aa8.72□□□□□ -1.01
LIG1-220ENST00000601091 KLF14Q8TD94 323 aaPredicted RBP8.72□□□□□ -1.01
LIG1-220ENST00000601091 COMMD5Q9GZQ3 224 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms