RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 DUSP13Q9UII6 198 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 HEATR1Q9H583 2144 aaKnown RBP15.11■□□□□ 0.01
UPF1-210ENST00000600689 LOC102724200A0A096LPH7 203 aaPredicted RBP15.11■□□□□ 0.01
UPF1-210ENST00000600689 A0A1W2PN81 502 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 H0Y8G0 127 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 SP1P08047 785 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 NPY1RP25929 384 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 Q0VG73 95 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 ACP7Q6ZNF0 438 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 ZNRF1Q8ND25 227 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 CLEC7AQ9BXN2 247 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 ENY2Q9NPA8 101 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 CDC42EP3Q9UKI2 254 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 SELENOKQ9Y6D0 94 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 MT-CO2P00403 227 aa15.1■□□□□ 0.01
UPF1-210ENST00000600689 PRB4P10163 310 aaPredicted RBP15.1■□□□□ 0.01
UPF1-210ENST00000600689 VDAC2P45880 294 aaPredicted RBP15.1■□□□□ 0.01
UPF1-210ENST00000600689 SLAQ13239 276 aa15.1■□□□□ 0.01
UPF1-210ENST00000600689 SRSF6Q13247 344 aaKnown RBP15.1■□□□□ 0.01
UPF1-210ENST00000600689 C1orf229Q6ZS94 237 aaPredicted RBP15.1■□□□□ 0.01
UPF1-210ENST00000600689 NIT1Q86X76 327 aa15.1■□□□□ 0.01
UPF1-210ENST00000600689 TSKUQ8WUA8 353 aa15.1■□□□□ 0.01
UPF1-210ENST00000600689 SLC45A2Q9UMX9 530 aa15.1■□□□□ 0.01
UPF1-210ENST00000600689 M0QZ24 198 aa15.1■□□□□ 0.01
UPF1-210ENST00000600689 RNFT1Q5M7Z0 435 aa15.1■□□□□ 0.01
UPF1-210ENST00000600689 FAM201AQ5SY85 155 aa15.1■□□□□ 0.01
UPF1-210ENST00000600689 IBA57Q5T440 356 aaKnown RBP15.1■□□□□ 0.01
UPF1-210ENST00000600689 LRRC29Q8WV35 223 aa15.1■□□□□ 0.01
UPF1-210ENST00000600689 LOXL4Q96JB6 756 aa15.1■□□□□ 0.01
UPF1-210ENST00000600689 SFXN3Q9BWM7 321 aa15.1■□□□□ 0.01
UPF1-210ENST00000600689 RPH3ALQ9UNE2 315 aa15.1■□□□□ 0.01
UPF1-210ENST00000600689 TRAV5A0A0B4J249 113 aa15.09■□□□□ 0.01
UPF1-210ENST00000600689 SH2D7A6NKC9 451 aaPredicted RBP15.09■□□□□ 0.01
UPF1-210ENST00000600689 HSBP1O75506 76 aa15.09■□□□□ 0.01
UPF1-210ENST00000600689 APCSP02743 223 aa15.09■□□□□ 0.01
UPF1-210ENST00000600689 ZNF766Q5HY98 468 aa15.09■□□□□ 0.01
UPF1-210ENST00000600689 C11orf53Q8IXP5 236 aa15.09■□□□□ 0.01
UPF1-210ENST00000600689 ZNF355PQ9NSJ1 428 aa15.09■□□□□ 0.01
UPF1-210ENST00000600689 CTRLP40313 264 aa15.09■□□□□ 0.01
UPF1-210ENST00000600689 WDR82Q6UXN9 313 aa15.09■□□□□ 0.01
UPF1-210ENST00000600689 SLC24A4Q8NFF2 622 aa15.09■□□□□ 0.01
UPF1-210ENST00000600689 MCRIP2Q9BUT9 160 aaKnown RBP15.09■□□□□ 0.01
UPF1-210ENST00000600689 GNB1LQ9BYB4 327 aa15.09■□□□□ 0.01
UPF1-210ENST00000600689 MPDU1O75352 247 aa15.08■□□□□ 0.01
UPF1-210ENST00000600689 CEACAM8P31997 349 aaPredicted RBP15.08■□□□□ 0.01
UPF1-210ENST00000600689 RPL8P62917 257 aaKnown RBP15.08■□□□□ 0.01
UPF1-210ENST00000600689 RAB31Q13636 194 aa15.08■□□□□ 0.01
UPF1-210ENST00000600689 TNXAQ16473 311 aa15.08■□□□□ 0.01
UPF1-210ENST00000600689 STUMQ69YW2 141 aa15.08■□□□□ 0.01
UPF1-210ENST00000600689 CD177Q8N6Q3 437 aa15.08■□□□□ 0.01
UPF1-210ENST00000600689 NABP2Q9BQ15 211 aa15.08■□□□□ 0.01
UPF1-210ENST00000600689 CLEC5AQ9NY25 188 aa15.08■□□□□ 0.01
UPF1-210ENST00000600689 MFAP2P55001 183 aa15.08■□□□□ 0
UPF1-210ENST00000600689 CX3CL1P78423 397 aa15.08■□□□□ 0
UPF1-210ENST00000600689 ZNF331Q9NQX6 463 aaPredicted RBP15.08■□□□□ 0
UPF1-210ENST00000600689 ZNRD1Q9P1U0 126 aa15.08■□□□□ 0
UPF1-210ENST00000600689 TRGV10A0A0A0MS01 117 aa15.08■□□□□ 0
UPF1-210ENST00000600689 ESDP10768 282 aa15.08■□□□□ 0
UPF1-210ENST00000600689 MDS2Q8NDY4 140 aa15.08■□□□□ 0
UPF1-210ENST00000600689 CNOT1A5YKK6 2376 aaKnown RBP15.07■□□□□ 0
UPF1-210ENST00000600689 GGTLC3B5MD39 225 aa15.07■□□□□ 0
UPF1-210ENST00000600689 PLAUP00749 431 aa15.07■□□□□ 0
UPF1-210ENST00000600689 KIR3DL3Q8N743 410 aa15.07■□□□□ 0
UPF1-210ENST00000600689 M0R2Z0 102 aa15.07■□□□□ 0
UPF1-210ENST00000600689 TRAT1Q6PIZ9 186 aa15.07■□□□□ 0
UPF1-210ENST00000600689 IL19Q9UHD0 177 aa15.07■□□□□ 0
UPF1-210ENST00000600689 CEP250Q9BV73 2442 aa15.06■□□□□ 0
UPF1-210ENST00000600689 WISP2O76076 250 aa15.06■□□□□ 0
UPF1-210ENST00000600689 TSPOP30536 169 aa15.06■□□□□ 0
UPF1-210ENST00000600689 PRRX1P54821 245 aa15.06■□□□□ 0
UPF1-210ENST00000600689 LEMD1Q68G75 181 aa15.06■□□□□ 0
UPF1-210ENST00000600689 PRSS46E5RG02 174 aa15.06■□□□□ 0
UPF1-210ENST00000600689 VAMP3Q15836 100 aa15.06■□□□□ 0
UPF1-210ENST00000600689 MORN5Q5VZ52 161 aa15.06■□□□□ 0
UPF1-210ENST00000600689 ZNF439Q8NDP4 499 aa15.06■□□□□ 0
UPF1-210ENST00000600689 OR2Z1Q8NG97 314 aa15.06■□□□□ 0
UPF1-210ENST00000600689 OR9G1Q8NH87 305 aa15.06■□□□□ 0
UPF1-210ENST00000600689 IGHV1-2P23083 117 aa15.06■□□□□ 0
UPF1-210ENST00000600689 PRDX2P32119 198 aa15.06■□□□□ 0
UPF1-210ENST00000600689 MORN2Q502X0 79 aa15.06■□□□□ 0
UPF1-210ENST00000600689 SPRR3Q9UBC9 169 aa15.06■□□□□ 0
UPF1-210ENST00000600689 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.05■□□□□ 0
UPF1-210ENST00000600689 KLRC4-KLRK1H3BQV0 150 aa15.05■□□□□ 0
UPF1-210ENST00000600689 AMY1AP04745 511 aa15.05■□□□□ 0
UPF1-210ENST00000600689 CD46P15529 392 aa15.05■□□□□ 0
UPF1-210ENST00000600689 S100A7P31151 101 aa15.05■□□□□ 0
UPF1-210ENST00000600689 FOXA3P55318 350 aaPredicted RBP15.05■□□□□ 0
UPF1-210ENST00000600689 LYG1Q8N1E2 194 aa15.05■□□□□ 0
UPF1-210ENST00000600689 TCTEX1D1Q8N7M0 179 aa15.05■□□□□ 0
UPF1-210ENST00000600689 DEFB108BQ8NET1 73 aa15.05■□□□□ 0
UPF1-210ENST00000600689 FER1L6-AS2Q96M78 137 aa15.05■□□□□ 0
UPF1-210ENST00000600689 LSM4Q9Y4Z0 139 aaKnown RBP15.05■□□□□ 0
UPF1-210ENST00000600689 ZNF318Q5VUA4 2279 aa15.05■□□□□ -0
UPF1-210ENST00000600689 WDR73Q6P4I2 378 aa15.05■□□□□ -0
UPF1-210ENST00000600689 VHLLQ6RSH7 139 aa15.05■□□□□ -0
UPF1-210ENST00000600689 TXNDC17Q9BRA2 123 aa15.05■□□□□ -0
UPF1-210ENST00000600689 KLF13Q9Y2Y9 288 aaPredicted RBP15.05■□□□□ -0
UPF1-210ENST00000600689 OTOGLQ3ZCN5 2332 aa15.05■□□□□ -0
UPF1-210ENST00000600689 OR4A47Q6IF82 309 aa15.04■□□□□ -0
UPF1-210ENST00000600689 OR4C5Q8NGB2 326 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms