RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 MISP3Q96FF7 219 aa13.07□□□□□ -0.32
SHKBP1-223ENST00000600552 NDUFA4O00483 81 aa13.06□□□□□ -0.32
SHKBP1-223ENST00000600552 TSPAN4O14817 238 aa13.06□□□□□ -0.32
SHKBP1-223ENST00000600552 IGHV3-48P01763 117 aa13.06□□□□□ -0.32
SHKBP1-223ENST00000600552 HRH1P35367 487 aa13.06□□□□□ -0.32
SHKBP1-223ENST00000600552 EWSR1Q01844 656 aaKnown RBP eCLIP13.06□□□□□ -0.32
SHKBP1-223ENST00000600552 SPSB3Q6PJ21 355 aa13.06□□□□□ -0.32
SHKBP1-223ENST00000600552 CROCCP3Q8IVE0 287 aa13.06□□□□□ -0.32
SHKBP1-223ENST00000600552 STPG3Q8N7X2 389 aa13.06□□□□□ -0.32
SHKBP1-223ENST00000600552 SLC25A46Q96AG3 418 aa13.06□□□□□ -0.32
SHKBP1-223ENST00000600552 TMEM56Q96MV1 263 aa13.06□□□□□ -0.32
SHKBP1-223ENST00000600552 PRNDQ9UKY0 176 aa13.06□□□□□ -0.32
SHKBP1-223ENST00000600552 IGHV3OR16-13A0A075B7E8 117 aa13.05□□□□□ -0.32
SHKBP1-223ENST00000600552 IGHV3-74A0A0B4J1X5 117 aa13.05□□□□□ -0.32
SHKBP1-223ENST00000600552 DBX1A6NMT0 343 aa13.05□□□□□ -0.32
SHKBP1-223ENST00000600552 K7EIM0 57 aa13.05□□□□□ -0.32
SHKBP1-223ENST00000600552 ADMP35318 185 aa13.05□□□□□ -0.32
SHKBP1-223ENST00000600552 ODF3L2Q3SX64 289 aa13.05□□□□□ -0.32
SHKBP1-223ENST00000600552 LYSMD2Q8IV50 215 aa13.05□□□□□ -0.32
SHKBP1-223ENST00000600552 APRG1Q8IVJ8 170 aa13.05□□□□□ -0.32
SHKBP1-223ENST00000600552 OR4A16Q8NH70 328 aa13.05□□□□□ -0.32
SHKBP1-223ENST00000600552 COMMD3Q9UBI1 195 aa13.05□□□□□ -0.32
SHKBP1-223ENST00000600552 OR4C46A6NHA9 309 aa13.04□□□□□ -0.32
SHKBP1-223ENST00000600552 EIF4EP06730 217 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-223ENST00000600552 S100GP29377 79 aa13.04□□□□□ -0.32
SHKBP1-223ENST00000600552 BMI1P35226 326 aa13.04□□□□□ -0.32
SHKBP1-223ENST00000600552 ZNF124Q15973 351 aa13.04□□□□□ -0.32
SHKBP1-223ENST00000600552 KCTD21Q4G0X4 260 aa13.04□□□□□ -0.32
SHKBP1-223ENST00000600552 SNX29P2Q8IUI4 249 aa13.04□□□□□ -0.32
SHKBP1-223ENST00000600552 GBGT1Q8N5D6 347 aa13.04□□□□□ -0.32
SHKBP1-223ENST00000600552 PINX1Q96BK5 328 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-223ENST00000600552 FKBP11Q9NYL4 201 aa13.04□□□□□ -0.32
SHKBP1-223ENST00000600552 SMIM31A0A1B0GVY4 71 aa13.03□□□□□ -0.32
SHKBP1-223ENST00000600552 NUPL2O15504 423 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-223ENST00000600552 SPINK9Q5DT21 86 aa13.03□□□□□ -0.32
SHKBP1-223ENST00000600552 RNASE12Q5GAN4 147 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-223ENST00000600552 Q6ZWC4 215 aa13.03□□□□□ -0.32
SHKBP1-223ENST00000600552 H2BFWTQ7Z2G1 175 aa13.03□□□□□ -0.32
SHKBP1-223ENST00000600552 TBC1D26Q86UD7 250 aa13.03□□□□□ -0.32
SHKBP1-223ENST00000600552 TMEM116Q8NCL8 245 aa13.03□□□□□ -0.32
SHKBP1-223ENST00000600552 LINC00476Q8WZB0 136 aa13.03□□□□□ -0.32
SHKBP1-223ENST00000600552 RNF2Q99496 336 aa13.03□□□□□ -0.32
SHKBP1-223ENST00000600552 SMPXQ9UHP9 88 aa13.03□□□□□ -0.32
SHKBP1-223ENST00000600552 ANAPC10Q9UM13 185 aa13.03□□□□□ -0.32
SHKBP1-223ENST00000600552 F8W735 103 aaPredicted RBP13.02□□□□□ -0.33
SHKBP1-223ENST00000600552 UBE2CO00762 179 aa13.02□□□□□ -0.33
SHKBP1-223ENST00000600552 TMEM127O75204 238 aa13.02□□□□□ -0.33
SHKBP1-223ENST00000600552 CTSGP08311 255 aa13.02□□□□□ -0.33
SHKBP1-223ENST00000600552 FGF2P09038 288 aa13.02□□□□□ -0.33
SHKBP1-223ENST00000600552 NAT1P18440 290 aa13.02□□□□□ -0.33
SHKBP1-223ENST00000600552 MFAP4P55083 255 aa13.02□□□□□ -0.33
SHKBP1-223ENST00000600552 WFDC3Q8IUB2 231 aa13.02□□□□□ -0.33
SHKBP1-223ENST00000600552 YIPF6Q96EC8 236 aa13.02□□□□□ -0.33
SHKBP1-223ENST00000600552 TSC22D3Q99576 134 aa13.02□□□□□ -0.33
SHKBP1-223ENST00000600552 RHPN1-AS1Q9BWJ2 59 aa13.02□□□□□ -0.33
SHKBP1-223ENST00000600552 VCX3AQ9NNX9 186 aa13.02□□□□□ -0.33
SHKBP1-223ENST00000600552 IGHV7-4-1A0A0J9YVY3 117 aa13.01□□□□□ -0.33
SHKBP1-223ENST00000600552 NUPR2A6NF83 97 aa13.01□□□□□ -0.33
SHKBP1-223ENST00000600552 C15orf61A6NNL5 157 aa13.01□□□□□ -0.33
SHKBP1-223ENST00000600552 K7EMT4 169 aa13.01□□□□□ -0.33
SHKBP1-223ENST00000600552 FCGR2BP31994 310 aaPredicted RBP13.01□□□□□ -0.33
SHKBP1-223ENST00000600552 RELQ04864 619 aaPredicted RBP13.01□□□□□ -0.33
SHKBP1-223ENST00000600552 LPCAT3Q6P1A2 487 aa13.01□□□□□ -0.33
SHKBP1-223ENST00000600552 CEMP1Q6PRD7 247 aaPredicted RBP13.01□□□□□ -0.33
SHKBP1-223ENST00000600552 OR1P1Q8NH06 330 aa13.01□□□□□ -0.33
SHKBP1-223ENST00000600552 MRGPRFQ96AM1 343 aa13.01□□□□□ -0.33
SHKBP1-223ENST00000600552 RNF183Q96D59 192 aa13.01□□□□□ -0.33
SHKBP1-223ENST00000600552 GALNT14Q96FL9 552 aa13.01□□□□□ -0.33
SHKBP1-223ENST00000600552 C6orf62Q9GZU0 229 aaPredicted RBP13.01□□□□□ -0.33
SHKBP1-223ENST00000600552 TP53TG1Q9Y2A0 90 aa13.01□□□□□ -0.33
SHKBP1-223ENST00000600552 C15orf62A8K5M9 175 aa13□□□□□ -0.33
SHKBP1-223ENST00000600552 M0QYG6 137 aa13□□□□□ -0.33
SHKBP1-223ENST00000600552 CHEK1O14757 476 aa13□□□□□ -0.33
SHKBP1-223ENST00000600552 MT-CO2P00403 227 aa13□□□□□ -0.33
SHKBP1-223ENST00000600552 TNFRSF9Q07011 255 aa13□□□□□ -0.33
SHKBP1-223ENST00000600552 IZUMO4Q1ZYL8 232 aa13□□□□□ -0.33
SHKBP1-223ENST00000600552 CMTM3Q96MX0 182 aa13□□□□□ -0.33
SHKBP1-223ENST00000600552 TMEM14BQ9NUH8 114 aa13□□□□□ -0.33
SHKBP1-223ENST00000600552 A0A087WXM4 84 aa12.99□□□□□ -0.33
SHKBP1-223ENST00000600552 IGHV3-66A0A0C4DH42 116 aa12.99□□□□□ -0.33
SHKBP1-223ENST00000600552 KIR2DL5BA0A0G2JN68 375 aa12.99□□□□□ -0.33
SHKBP1-223ENST00000600552 KIR2DL5BA0A0G2JPC4 375 aa12.99□□□□□ -0.33
SHKBP1-223ENST00000600552 I3L2K1 104 aa12.99□□□□□ -0.33
SHKBP1-223ENST00000600552 GNG7O60262 68 aa12.99□□□□□ -0.33
SHKBP1-223ENST00000600552 IGKV1-39P01597 117 aa12.99□□□□□ -0.33
SHKBP1-223ENST00000600552 IGKV1D-39P04432 117 aa12.99□□□□□ -0.33
SHKBP1-223ENST00000600552 PGAM2P15259 253 aa12.99□□□□□ -0.33
SHKBP1-223ENST00000600552 NCS1P62166 190 aa12.99□□□□□ -0.33
SHKBP1-223ENST00000600552 ERHP84090 104 aaKnown RBP12.99□□□□□ -0.33
SHKBP1-223ENST00000600552 KIR2DL5AQ8N109 375 aa12.99□□□□□ -0.33
SHKBP1-223ENST00000600552 KIR2DL5BQ8NHK3 375 aa12.99□□□□□ -0.33
SHKBP1-223ENST00000600552 GPX8Q8TED1 209 aa12.99□□□□□ -0.33
SHKBP1-223ENST00000600552 MAP6D1Q9H9H5 199 aa12.99□□□□□ -0.33
SHKBP1-223ENST00000600552 KLK5Q9Y337 293 aaPredicted RBP12.99□□□□□ -0.33
SHKBP1-223ENST00000600552 TRAV14DV4A0A0A6YYC5 116 aa12.98□□□□□ -0.33
SHKBP1-223ENST00000600552 FAM25AB3EWG3 89 aa12.98□□□□□ -0.33
SHKBP1-223ENST00000600552 FAM25CB3EWG5 89 aa12.98□□□□□ -0.33
SHKBP1-223ENST00000600552 FAM25GB3EWG6 89 aa12.98□□□□□ -0.33
SHKBP1-223ENST00000600552 HPGDSO60760 199 aa12.98□□□□□ -0.33
SHKBP1-223ENST00000600552 PI3P19957 117 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms